Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 609 a.a., ABC-type oligopeptide transport system, periplasmic component from Pseudomonas stutzeri RCH2

 Score =  501 bits (1289), Expect = e-146
 Identities = 264/600 (44%), Positives = 360/600 (60%), Gaps = 20/600 (3%)

Query: 14  LLLACLSL--PALA--APQHALTLYDEPPKYPADFKHFDYVNPDAPKGGTFRQSSFGGFD 69
           LLL CL+L  PALA  +  H    +    KYPA F HFD+VNP APKGG  +  + G FD
Sbjct: 6   LLLTCLALSFPALATISESHGYAQFGTL-KYPASFTHFDWVNPRAPKGGRIKLMASGTFD 64

Query: 70  SLNPFINKGVAAE--------NIGIIYDTLM------RQSQDEPFTEYGLVAGKIEKAPD 115
           +LNP+  KG +           I  + + LM        S DEP + YGL+A  +E + +
Sbjct: 65  TLNPYTFKGTSPSATPGFLQYGISELNEPLMVGTGIYDPSGDEPASSYGLIAESVEYSDN 124

Query: 116 NSWVRFYLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVLF 175
           NSWV F LR +ARFHDG P+ A DV F++  L+KDG P YR     V  V      ++ F
Sbjct: 125 NSWVVFNLRKQARFHDGKPITAYDVAFSYRLLVKDGHPQYRTNLQGVKRVDILNRHRIRF 184

Query: 176 KFKHKNNRELPLILGQLPVLPKHWYENREFNRGNLEIPLGSGPYKVAKVKAGRSVRYERV 235
            F+  +N  L + LG+LPVLP+H+++NR+F     E PLGSGPY++  V+ GR V +ERV
Sbjct: 185 VFEQPDNPLLVMRLGELPVLPQHYWKNRDFKATTFEPPLGSGPYRITHVQPGRQVVFERV 244

Query: 236 KDYWAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAV 295
           +++W   LP+N+G YNF+ +  + YRD+ VA EA K   FD+ +E  AKNWA  Y  PA+
Sbjct: 245 RNWWGAKLPVNQGKYNFNRVDVEFYRDSVVAFEAFKVAEFDFYIEHQAKNWANGYEFPAM 304

Query: 296 REGRLIKEELPNGNPTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRT 355
             G +I+ E+P+  PT  Q    N RR  F D RVR+AL L+ D+EWTN+ LF GAY R+
Sbjct: 305 LRGDIIRAEIPHQIPTQTQALFMNSRRATFADQRVREALGLMFDFEWTNRALFYGAYRRS 364

Query: 356 GSYFENSEMAARGLPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAYKL 415
            SY+ NS+  A G P   E  +L P R ++P ++FTE F  P +DG G+ RE  R+A  L
Sbjct: 365 ESYYPNSDFTATGKPEGGEWLLLSPYRKQLPAKLFTEPFELPRTDGRGIPRETLRRALGL 424

Query: 416 LQEAGWKIVDDKMVDAQGKPASIEFLLAQTEFERILLPFKRNLADLGIELNIRRVDVSQY 475
           L EAGWK  D  +++  G+P   E LL     ER+L P+  NLA +GI+ N+R VD +QY
Sbjct: 425 LAEAGWKASDAGLLNGAGQPLRFEILLVNPRLERVLQPYVENLARIGIQANLRTVDSAQY 484

Query: 476 ITRLRSRDYDMIVGGYPQSNSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQLIN 535
             RL   DYDMI+    QS SPG EQ  ++ S+  D  G RN+ G+ +P ID L+ +L+ 
Sbjct: 485 KQRLDHYDYDMILMTLVQSLSPGIEQHLYFHSSQVDVKGGRNYAGVANPIIDDLIAKLLA 544

Query: 536 ADSRQSLIDHCRALDRVLLWGYYVIPNWHIKTWRVAYWNHIGHPNVSPKYDIGIDTWWIK 595
           A +R   +   RA+DRVLLW +Y IPNW I   R+AY N   H   +P Y +G+  WW+K
Sbjct: 545 AQTRDEQVAAARAIDRVLLWNHYTIPNWFISNHRLAYRNRFAHV-TTPPYTLGLRAWWLK 603