Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  458 bits (1178), Expect = e-133
 Identities = 248/612 (40%), Positives = 362/612 (59%), Gaps = 22/612 (3%)

Query: 3   RPLLLSLSLALS--FPAAAIVSESHGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAF 60
           +P+ L ++LALS  F  AA++ E+     FG  KYP  FTHFD+VNPQAPK G +     
Sbjct: 11  KPIALGVTLALSSQFSWAAVI-ETTRLVGFGEAKYPENFTHFDYVNPQAPKYGKVTFGEL 69

Query: 61  GTFDTLNPYTFKGSSPITTPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVE 120
           GT+D  N +  +G +   T        +EL +PLM     + P+ DE  S Y LIA  + 
Sbjct: 70  GTYDNFNRFASRGVAAANT--------AELYDPLM-----FSPA-DEIDSYYPLIASKIR 115

Query: 121 YSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPL 180
           YS+D +W+  +L P AR+HDG+PIT+ DV FS+   + +G P YR   Q+V+ V  +   
Sbjct: 116 YSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAER 175

Query: 181 RIRFVFKRAGNPLLILRLGEMPVLPKHYWQKRDFKATTFEPPLGSGPYRITQVQPGRRLV 240
            +R   K+     L        VLPKHYWQ ++      EPP+GSG Y+I   +PG+ + 
Sbjct: 176 TVRIEMKQPNREQLFSLAQSTRVLPKHYWQYKNLAEPLNEPPVGSGAYQIVDFKPGQSVT 235

Query: 241 FERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYN 300
           ++   +YW KDL VN G+ NF +++Y++YRD TV  EAFKAGEFD+  E+QAK WA  Y 
Sbjct: 236 YKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYT 295

Query: 301 FPAVRRGEVIKAQIPHSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSA 360
                +G + K +I H  P  TQG   N++R  F D RVR+AL   LDFEW N+ LF   
Sbjct: 296 GRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQ 355

Query: 361 YRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGISRQTLRQ 420
           Y+R+ SY+ N+E+ A GLP   E  +L P+++QLPA++F+E Y+ S TDG G  R  +R+
Sbjct: 356 YQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMRE 415

Query: 421 ALGLLAEAGWKLHGQRLVDSK-GQQLRMELLLVNPNLERILQPYVENLSSIGIDARLRTV 479
           A  LL EAGW+L  + + + K G+ L  ELL+ +P  ERI  P  +NL  +GI+ ++RTV
Sbjct: 416 AFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTV 475

Query: 480 DRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKDPVVDHLL 539
           D  QY +RL   DFDMI    +    P     + ++S+      S N AG   PV+D L 
Sbjct: 476 DTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVWNSNY--MDSSYNSAGANHPVIDALT 533

Query: 540 DTLLAARTRDDQV-AAARALDRVLSWHYYMIPNWYLDNHRLAYRNRFAFVTT-PPYTLGL 597
           + +  ++   +++ A   ALDRVL W++Y+IP W+L  +R+A  ++F+  +  P Y+LGL
Sbjct: 534 EQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGL 593

Query: 598 NSWWIKTSEKAQ 609
           ++WWI   + A+
Sbjct: 594 DTWWIDQEKAAR 605