Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 619 a.a., periplasmic binding protein from Sinorhizobium meliloti 1021

 Score =  444 bits (1142), Expect = e-129
 Identities = 253/616 (41%), Positives = 355/616 (57%), Gaps = 31/616 (5%)

Query: 6   LLSLSLALSFPAAAIVSES---HGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAFGT 62
           LL+ +L L  PA+    +    H  +  G  KY   F  FD+VNP APKGG LR    GT
Sbjct: 16  LLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGT 75

Query: 63  FDTLNPYTFKGSSPITTPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVEYS 122
           FD+ NP   KG   + T      G+S L    ++ + +     DE T+SYGL+A  + Y 
Sbjct: 76  FDSFNPILAKGE--VAT------GVSSLVFETLLKSAE-----DEITTSYGLLAEGISYP 122

Query: 123 EDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRI 182
           +D S   F LR EA+W DG+P+T  DV FS+  ++K+ +P++    + V   +  G   +
Sbjct: 123 DDISSATFRLRAEAKWADGKPVTPEDVVFSF-DMVKEHNPLFSNYYRHVISAEKTGERDV 181

Query: 183 RFVFKRAGNPLLILRLGEMPVLPKHYWQ-------KRDFKATTFEPPLGSGPYRITQVQP 235
            F F    N  L   LG+ P+LPKH+W+       KRD   TT EP +GSGPY+I   Q 
Sbjct: 182 TFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQA 241

Query: 236 GRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNW 295
           G  + FE   +YWGKDL VN G+YNF  + Y F+ D +V FEAF+AG  D Y ++ A +W
Sbjct: 242 GGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHW 301

Query: 296 ANGYNFPAVRRGEVIKAQIPHSIPTQ--TQGLFMNSRRAAFSDPRVRQALGLMLDFEWTN 353
           A  Y+FPA++ G VI+ +I + +      Q    N RR  F D RVRQAL    DFE  N
Sbjct: 302 ATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLN 361

Query: 354 RALFSSAYRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGI 413
           R+L  +A++R  SY+  +E A+SGLP G+E  +L   +D++PA +F+ PYK         
Sbjct: 362 RSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQK 421

Query: 414 SRQTLRQALGLLAEAGWKLHGQRLVDSK-GQQLRMELLLVNPNLERILQPYVENLSSIGI 472
            R  LR+AL L  EAG++L G RLV++K G+    E+LL NP  ER + P+V ++  IGI
Sbjct: 422 VRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGI 481

Query: 473 DARLRTVDRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKD 532
           DAR+RTVD +QY  R+  +D+DMI     QTL PG EQ  Y+ S+     GS+NYAG+ D
Sbjct: 482 DARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIAD 541

Query: 533 PVVDHLLDTLLAARTRDDQVAAARALDRVLSWHYYMIPNWYLDNHRLAYRNRFAFVTTPP 592
           P +D L+  ++ A  R++ VA  RALDRVL  H+Y++P +Y    R+AY N  A     P
Sbjct: 542 PAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELP 601

Query: 593 YTLGL---NSWWIKTS 605
           Y  G+   ++WW K +
Sbjct: 602 Y-YGMDFPDAWWSKNT 616