Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 615 a.a., extracellular solute-binding protein, family 5 (NCBI) from Rhodospirillum rubrum S1H

 Score =  540 bits (1392), Expect = e-158
 Identities = 279/610 (45%), Positives = 382/610 (62%), Gaps = 20/610 (3%)

Query: 6   LLSLSLALSFPAAAIVSES---HGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAFGT 62
           LL+L L L+   AA  + S   H  + +G +KYPA FTHFD+VNP+APKGG +R  AFGT
Sbjct: 12  LLALPLPLATVQAAETASSGPMHALSLYGDIKYPADFTHFDYVNPEAPKGGAIRLSAFGT 71

Query: 63  FDTLNPYTFKGSSPITTPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVEYS 122
           FDTLNPYT KG++         +GI      L V      PS DEP++ YGL+A+++E +
Sbjct: 72  FDTLNPYTVKGTAA--------FGIGLTQTTLTV------PSADEPSTEYGLVAQTMELA 117

Query: 123 EDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRI 182
            DRSW++F LRPEARW DGQPIT+ DVAFS++ L   G P+Y +    V  V++L   R+
Sbjct: 118 ADRSWLIFTLRPEARWSDGQPITAEDVAFSFQILKDKGQPLYNSYYSNVTGVEVLDAKRV 177

Query: 183 RFVFKRAGNPLLILRLGEMPVLPKHYWQKRDFKATTFEPPLGSGPYRITQVQPGRRLVFE 242
           +F F    N  L   +G++PVLPKHYW  RDF  TT + P+ +GPYRI   +PGR++ +E
Sbjct: 178 KFTFSPGENRELPSIVGQLPVLPKHYWATRDFAETTLDQPVSAGPYRIASFEPGRQITYE 237

Query: 243 RVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYNFP 302
           RVK+YW + L V++G  NF+R+ Y++YRD TV  E FKAG FD   EH AKNWA  Y FP
Sbjct: 238 RVKDYWAEALPVSKGMNNFDRIRYDYYRDVTVTLEGFKAGAFDFNSEHSAKNWATEYKFP 297

Query: 303 AVRRGEVIKAQIPHSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSAYR 362
           AV  G VI  ++P   P + QG   N RRA F DPRVR+AL    DFEWTN+ LF   Y 
Sbjct: 298 AVSEGHVITEKVPVKGPDREQGFIFNMRRAQFQDPRVREALAYGFDFEWTNQTLFYGQYT 357

Query: 363 RSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTD-GRGISRQTLRQA 421
           R+ S++ NSE AA GLP  +E  +L P R Q+P ++F+E Y+   TD  +G  R  L++A
Sbjct: 358 RTRSFFENSELAAVGLPGPEELKILEPLRAQIPPRVFTEEYQPPVTDEAKGGLRANLKKA 417

Query: 422 LGLLAEAGWKLHGQ-RLVDSKGQQLRMELLLVNPNLERILQPYVENLSSIGIDARLRTVD 480
           L L+ EAGW ++   ++V++ GQ    E+LL   ++ER++ P V+N   +GI A +RTVD
Sbjct: 418 LDLMKEAGWTVNAAGKMVNAAGQPFTFEILLRQADVERMVLPMVKNFERLGITATVRTVD 477

Query: 481 RAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKDPVVDHLLD 540
             Q+  R+  FDFDM+     Q+ SPG EQ   + S+ A   G+ N AG+K P VD L++
Sbjct: 478 TPQFISRVQSFDFDMVSAVWAQSNSPGNEQRDLWSSTAADIPGTSNLAGLKSPAVDSLIE 537

Query: 541 TLLAARTRDDQVAAARALDRVLSWHYYMIPNWYLDNHRLAYRNRFAF-VTTPPYTLGLNS 599
           +++AA TR D +A  RALDRVL W +  IP++Y    R+AY N F     TP   +   +
Sbjct: 538 SVIAAPTRADLIARTRALDRVLQWSFPWIPHYYGAFERIAYWNVFGRPAVTPNRGVVFQA 597

Query: 600 WWIKTSEKAQ 609
           WW    + A+
Sbjct: 598 WWFDAEKAAK 607