Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 606 a.a., extracellular solute-binding protein family 5 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  377 bits (969), Expect = e-109
 Identities = 224/597 (37%), Positives = 320/597 (53%), Gaps = 24/597 (4%)

Query: 19  AIVSESHGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAFGTFDTLNPYTFKGSSPIT 78
           A+ + SHG A +G    P  F    + NP APKGG +     G FD+LNP+  KG  P  
Sbjct: 25  ALAAPSHGIAMYGDPALPPDFVSLPYANPDAPKGGRIVLGEVGGFDSLNPHILKGRVP-- 82

Query: 79  TPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVEYSEDRSWVVFNLRPEARW 138
              +Q   ++  +E LM        + DEP + YGL+A SVE   D  WV F LRPEAR+
Sbjct: 83  ---WQLRFLA--HESLMAR------NYDEPFALYGLLAESVEVDPDGLWVAFTLRPEARF 131

Query: 139 HDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRIRFVFKRAGNPLLILRL 198
            DG P+T  DV +S+ TL   GHP Y     +VQ  +  GP  +R  F      L ++ +
Sbjct: 132 SDGSPVTVEDVLWSFETLGTVGHPRYLGAWAQVQSAEATGPRSLRITFTEPNRELALI-M 190

Query: 199 GEMPVLPKHYWQKRDFKATTF-EPPLGSGPYRITQVQPGRRLVFERVKNYWGKDLAVNRG 257
           G  P+L K  W+ +DF  +   E P+ S PY I   +PGR +   R  +YW  DL + RG
Sbjct: 191 GMRPILKKAQWEGKDFAESGLDEAPISSAPYVIADFEPGRFVTLRRNPDYWAADLPIRRG 250

Query: 258 KYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYNFPAVRRGEVIKAQIPHS 317
            +N + +  EF+ DA V FEAFKAG      E     W   Y+FPA++ GEV+K+ IPH 
Sbjct: 251 VHNLDEIRMEFFGDAGVMFEAFKAGILTSIRETNTAKWNRDYDFPAMQAGEVVKSVIPHE 310

Query: 318 IPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSAYRRSTSYYPNSEFA-AS 376
            P+   G  MN+RRA F+D RVR AL    +FE  NR L  +   R TSY+ NS  A   
Sbjct: 311 RPSGITGFAMNTRRADFADWRVRDALIHAFNFELINRTLNGAEVPRITSYFSNSVLAMQD 370

Query: 377 GLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGISRQTLRQALGLLAEAGWKLHGQR 436
           G  TG+   LLAP+ D LP     E Y +  +DG   +R+ +R AL L+ EAG+ +    
Sbjct: 371 GPATGRVAELLAPYADTLPPGAL-EGYTLPVSDGSEANRRNIRAALRLMDEAGYTIEEGV 429

Query: 437 LVDSKGQQLRMELLLV--NPNLERILQPYVENLSSIGIDARLRTVDRAQYKQRLDQFDFD 494
           +    G     E+LL   +  ++ ++  Y ++L  +G+   + TVD AQY++R D +DFD
Sbjct: 430 MTRPDGTPFTFEILLSQGSSEVQSMINIYAKSLERLGVSVDITTVDSAQYRERTDAYDFD 489

Query: 495 MILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKDPVVDHLLDTLLAARTRDDQVAA 554
           M   T   +LSPG EQ LY+ S      GS+N+ G+    VD L+D +L+A++++D +A 
Sbjct: 490 MTYYTRGLSLSPGNEQRLYWGSEGVDIPGSRNWPGIDSAAVDGLIDAMLSAKSQEDYIAT 549

Query: 555 ARALDRVLSWHYYMIPNWYLDNHRLAYRNRFAFVTTPP-----YTLGLNSWWIKTSE 606
            RALDRVL+   Y+IP W+    R+A+     +    P      +   + WW K++E
Sbjct: 550 VRALDRVLTAGRYVIPIWFNPVSRIAHAADLTYPEALPAYGDWISFHPDVWWSKSAE 606