Pairwise Alignments

Query, 476 a.a., Membrane-bound lytic murein transglycosylase D from Pseudomonas putida KT2440

Subject, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

 Score = 53.1 bits (126), Expect = 2e-11
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 333 LSNLNPEQLVSLQPPKAAFARAVAEA-------KAPVG--------ARSYRVKRGDNLSA 377
           +SN + E+L+  +  +   ARA+A A         P G        A+ ++V+RG+++  
Sbjct: 369 ISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFANRGKAQKHKVQRGESIGL 428

Query: 378 IAKANRVSVKDIKRWNRLSGNSLRAGQVLALRGGSAPSAAGNRVAAS--GKRSTQYKVRK 435
           IA    VSV  +K+ N L  +++  GQ+L +   SAP+     V A+     +  + V+ 
Sbjct: 429 IANQYGVSVDALKKANNLKSSTISVGQLLTIPASSAPNPVPVPVMANPVETETITHVVKT 488

Query: 436 GDSLYLVAKRFNVEMKHLKRWNPRSGHALKPGQTLTV 472
           GD L  +A  + V +  +K+ N      L  GQ L +
Sbjct: 489 GDFLGKLATTYKVSVASIKKENNLKSDTLVLGQKLKI 525



 Score = 45.8 bits (107), Expect = 4e-09
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)

Query: 334 SNLNPEQLVSLQPPKAAFARAVAEAKAPVGARS--YRVKRGDNLSAIAKANRVSVKDIKR 391
           S ++  QL+++    A     V     PV   +  + VK GD L  +A   +VSV  IK+
Sbjct: 449 STISVGQLLTIPASSAPNPVPVPVMANPVETETITHVVKTGDFLGKLATTYKVSVASIKK 508

Query: 392 WNRLSGNSLRAGQVLALRGGSAPSAAGNRVAASGKRSTQYKVRKGDSLYLVAKRFNVEMK 451
            N L  ++L  GQ L +            V+   K   ++KV++G+ L  +A ++NV + 
Sbjct: 509 ENNLKSDTLVLGQKLKIT-----------VSLKDKPLRKHKVQRGEFLSKIADQYNVSVD 557

Query: 452 HLKRWNPRSGHALKPGQTLTV 472
            +++ N      L  GQ L +
Sbjct: 558 SIRQANQLRTDQLLVGQQLII 578