Pairwise Alignments

Query, 252 a.a., DNA polymerase III subunit epsilon from Pseudomonas putida KT2440

Subject, 242 a.a., DNA polymerase III, epsilon subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  231 bits (590), Expect = 8e-66
 Identities = 137/246 (55%), Positives = 168/246 (68%), Gaps = 22/246 (8%)

Query: 8   RFVILDTETTGMPVGEG-----HRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINV 62
           R VILDTETTGM  G G     HRIIEIGCVEVI RRLTGR++H Y+ P +  D  AI V
Sbjct: 9   RQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINPGQAIDPEAIAV 68

Query: 63  HGITDAFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFAL---LGQQDRADI 119
           HGITD  +  +PRF  +A+EF  FI GA +V HNA FDV F+++EF+L   LG + R DI
Sbjct: 69  HGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTR-DI 127

Query: 120 SQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGG 179
              C ILD+L +A+  HPGQ+N+LDALCKRY IDNS R  HGALLD+E+LADVYL+MTGG
Sbjct: 128 ---CEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLSMTGG 184

Query: 180 QTSLSLAGNGADTEEDGQGAGGSEIRRIVGRAPG-RVIMASAEELEAHAERLAAIAKSAG 238
           QT  +L+      EE GQ  GG  I+R    +   +VI ASA+EL  H +RL  +AKS  
Sbjct: 185 QTKFNLS-----NEEVGQEGGG--IQRFDPTSLNLKVICASADELVMHEKRLDLVAKS-- 235

Query: 239 GPSLWQ 244
           G  LW+
Sbjct: 236 GKCLWR 241