Pairwise Alignments

Query, 593 a.a., NADH-quinone oxidoreductase subunit C/D from Pseudomonas putida KT2440

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  104 bits (260), Expect = 6e-27
 Identities = 96/391 (24%), Positives = 173/391 (44%), Gaps = 49/391 (12%)

Query: 214 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLG 273
           +GP HP      RI L ++GE +     D+GY HRG E++ E + +   I  ++R+  + 
Sbjct: 6   IGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCGIC 65

Query: 274 GVMNNLPYVLAVEKLAGIKVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAMTPVFFT 333
             ++   +   +E +  I+VP+K   +R++  E  RI SHL+    Y   +   T   + 
Sbjct: 66  SYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGIWM 125

Query: 334 FTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWDKLVKDFVEWLPKRLDEYTKAAL 393
              R+    ++E ITG R++  +  +GGV  DL        K+ ++ + K++DE+ +  +
Sbjct: 126 LNVRESIMDLLELITGNRVNMGFNVVGGVRLDLN-------KEILDKIHKKIDEF-EEDV 177

Query: 394 QNSI----------LKGRTIGVAAYNTKEALEWGTTGAGLRATGCNFDLRKARPYSGYEN 443
           +N I          ++ + IG   Y  KE ++    G   RA+G      + R +  Y+ 
Sbjct: 178 KNIIEVFETGPLIGMRSKHIGKIGY--KEIMKTRAAGPVARASGIPESDWRIR-HETYKA 234

Query: 444 FEFEVPLAHNGDAYDRCMVRVEEMRQSIRIIDQCLRNMPEGPYKADHPLTTPPPKERTLQ 503
             F+    + GD Y R MVR +E+  S+ +I + L +  E                    
Sbjct: 235 LNFKPDWRNEGDNYARMMVRHDEVLTSVELIRRALEHYAES------------------- 275

Query: 504 HIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQ 563
               ++ +  ++       A E     EA +G   Y +    G +  R  IRTP+  +L+
Sbjct: 276 --SGIVRNKAEIR------ATEGEWYNEAHRGEVYYKIAITDGGLIKRIIIRTPTVMNLE 327

Query: 564 QIPSVIKG-SMVADLIAYLGSIDFVMADVDR 593
               +IK    +AD +A   SID  ++  +R
Sbjct: 328 AYKYMIKDCPTIADAVATYTSIDPCVSCTER 358