Pairwise Alignments

Query, 298 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  177 bits (450), Expect = 2e-49
 Identities = 107/297 (36%), Positives = 161/297 (54%), Gaps = 4/297 (1%)

Query: 1   MSKRLMPSTTALQCFEAAARHLSFTRAAQELHLTQSAVSKQVAQLEDMLSHSLFQRIRRR 60
           MS+RL P   A++ FEAAARHLSFTRAA+EL +TQ+AVS Q+  LE+ L   LF+R  R 
Sbjct: 1   MSRRL-PPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRS 59

Query: 61  LHLTPAGALYLTEVNKILTQIDISSRYILSYGDETEVLRIATQPTFGARWLVPRLKGFGD 120
           L LT  G  Y  ++  I  Q+  ++  +L+       L ++T P+F  +WLVPRL  F +
Sbjct: 60  LLLTEEGQGYFLDIKDIFVQLADATDRLLARS-AIGSLTVSTSPSFAIQWLVPRLANFSE 118

Query: 121 RYPRIHLDVRNELEPFDLVQAKADVAFFFGQGTWPGATCIELFSEEVVPVCSPQLLASHR 180
             P I + ++   +    +    DVA ++G G WPG    +L +E ++PVCSP LL+  +
Sbjct: 119 NNPDIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPK 178

Query: 181 -FDSAQALTEHRLLQCVSRPEAWHEWFLGLGLHSQNSYHGPRFDTFYLCIRAAISGCGIA 239
                  L  H LL   SR + W  WF   G++  N   GP F    L ++AA  G G+A
Sbjct: 179 PLSQPSDLKHHTLLHDSSRHD-WQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVA 237

Query: 240 LIPRYLVAEELSEGKLVVAWDHPVASNGRHFIAHAEHAAEVPKIRAFVQWIRERVAE 296
           L    L   ++  G+LV  +   + S   +++   ++ AE+ KI AF +W+ +   E
Sbjct: 238 LGYSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWMLDMFEE 294