Pairwise Alignments

Query, 488 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 469 a.a., type VI secretion system protein TssA from Vibrio cholerae E7946 ATCC 55056

 Score =  182 bits (461), Expect = 3e-50
 Identities = 116/469 (24%), Positives = 221/469 (47%), Gaps = 24/469 (5%)

Query: 18  PIDAQVPAGLFDGEDETYQAIDQEMVKLGGLQEASIDWDYIEEASAQYLERQCKHLRIVA 77
           PI +  P G    +   +  I+ +M+K+G L  AS+ WD +E ++ + L  Q K ++++ 
Sbjct: 13  PISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQWDEVEHSTLKLLGEQSKDIKLLV 72

Query: 78  HLSVAWLRSGCWERWGFTLALLGGMIDNYWETAHPTPGPKGFLTKRKIVGLLFNRLIDAL 137
           +L           R   + A++   ++ YW  ++P PGP+G L +RK    +  R    +
Sbjct: 73  YLLQCLHNQVTPTRLITSFAVMSEFLNQYWNDSYPAPGPRGNLPRRKFFSQMAQRFTTVI 132

Query: 138 PRLDRFTYTPAHAAAAKGALAR----LLRQQEAAQLAPAVLV----ELERLLHKHTALAN 189
            + D      A   A + A+      + +Q  +++L  +V+V    E++R   +    A 
Sbjct: 133 EKFDFHHLDEADRQALQAAVEEWQQAVEKQGLSSELVESVVVRITAEIKRAEQRQQVTAQ 192

Query: 190 GIGERDAPKAPVESPQPAPLADVIATPKPCLSGGNERETRRAILSMAELINQQDPYDPTG 249
              ER+ P A   SP  + + D            +++  ++ +L +A+ + +Q+      
Sbjct: 193 SSAERETPSAATPSPAASMVVD----------HSSDKAAKQTLLKVADFLAEQEFGIALS 242

Query: 250 YQLRRFGLWAHIQAAPQTRQCNRTELMAVPRDIASDYEEAIAGTVIDAALLQRVEKSVSA 309
            +LRRF +W  I + P  +    T L  +  D   DY++ +     D AL ++VE+S++ 
Sbjct: 243 IRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQLRHP--DLALWRKVEQSLTM 300

Query: 310 SPFWIRGSFLAATAASRLAMGEVAEAIRAATARFVLRMPALQQLCFSDGRVFVDDQCLAW 369
           +P+W  G +++ T A +L   +  +AI   T +F+ R+P+L +L F  G  FV D    W
Sbjct: 301 APYWFEGQWMSYTIAQQLGKSDWCQAIAEETQQFLRRLPSLLELKFKGGEPFVSDSVKEW 360

Query: 370 LKGADGQSEQAEASQ---EFTSLREELVSQLESGGVEPVLLRLQGMQADFRAPRERCHTT 426
           L    GQS+ A       ++   R+E     + GG+   L  L         PR++ +  
Sbjct: 361 LASV-GQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALSMLNDGLVSAVEPRDKFYWR 419

Query: 427 LIAADLLAARGVSWLAQDLCAGVARTMQQTTASDWEPEVFQRLQQYASS 475
           L++ADLL A  +  +A +    +   +   +  +WEP + +++Q+Y +S
Sbjct: 420 LLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQIQRYTTS 468