Pairwise Alignments

Query, 1208 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score =  820 bits (2117), Expect = 0.0
 Identities = 455/1203 (37%), Positives = 698/1203 (58%), Gaps = 39/1203 (3%)

Query: 4    LWKYLKRWGWPLMTRIGLAMPLLLGLGAVLMLVAIWWLGPQWTWRDQQPLASVAHRSMAS 63
            +WK++      L   +  A+P+LL    +L+ VAIWW GP       +PL S+  R +AS
Sbjct: 1    MWKFIVGIVRRLKPTVVAALPILLFTTFILLNVAIWWAGPWLEVAGYKPLESIMARVVAS 60

Query: 64   LVFVLVALLSWLVVLRTRFRRLQAERQQAMAAEVDPTQPFVHAQEKALSQGLARYLDNAG 123
             +F L  L  W +    + +  ++E+++      DP + +   QE  L+Q +     +  
Sbjct: 61   SLFTLGCLAVWGIWQWRKLQAFKSEQKREEQLRQDPIKVYEQRQEVELNQVMLNMKQSLN 120

Query: 124  GRRALYRLPWYLVLGARQAGKSSFIDCTDQSFSLTRIDKAQARGRPAQALAYPVGWWISN 183
                LY LPWYLVLG   AGK+S I+ + Q+F  + + +A  +        Y   WWI +
Sbjct: 121  KHNYLYALPWYLVLGLENAGKTSLINRSGQNFVFSSVMRASGQ---KSENPYSFDWWIGD 177

Query: 184  DAVIIDPPGAFISQNGPADSLGSDSTDVESSVPSGTQAKLWQHLLDWLQRNRSQRALNGL 243
            ++V+IDP G  ++Q       G+ S + + ++    + +LW H +DWL R RS+R LNG+
Sbjct: 178  ESVLIDPDGELLTQ-------GNRSEENDGAL----ERRLWLHFVDWLDRTRSRRPLNGI 226

Query: 244  VLVVDLPALLHGTVEQRTALAHLLRTRLYEVSSQLGSRLPLYVVLSKFDLLDGFDQFYSK 303
            VL +D+  L   T  +R A A+LLR RL E+   L +RLP+Y+ L+K DLL GF+ F+  
Sbjct: 227  VLALDVAHLATATASERKAYANLLRARLRELMETLSTRLPVYIALTKLDLLHGFEPFFKH 286

Query: 304  LSAAKRNSLFGFTFKLDAVDTFDAWLGEYGEHYDRLLEQLFEQVIDRLDVQGSPALRSRL 363
             + ++R  + GFTF +D+VD  D+WL E+   Y + + ++   +   +    +   R+ +
Sbjct: 287  YTKSQREEVLGFTFSMDSVDNLDSWLEEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAI 346

Query: 364  YSLHRQLLGLRPMLLSFLRETLASDRFTTPALVRGVYWSSVVQHGDVRNAFVREAAQPYK 423
            YS  RQ+ GL+ +L  F +E LASD+F+T ALVRG Y++SV Q G   NAF   A++ Y 
Sbjct: 347  YSFTRQISGLKEILQQFFQEALASDQFSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYG 406

Query: 424  TSLPLLEGKPQAKALAYFIQQAFGRVIYKEAGLAGDNVRVARRKRQLLWVGSSVGVLAFC 483
             S  +   +    +  YF Q+ F  +IY EAGLA DN RVA+ KR+L+ +      +A  
Sbjct: 407  LSHAINTAQRAKNSTVYFTQKLFTHIIYPEAGLASDNFRVAKNKRRLMGLSFVACSVATL 466

Query: 484  VAIASWHRYFDINGVKAASVLAKSREYSHHEVDQRLDPTGRNLLEPLDQIRDAVAVFGDY 543
            +   +WHR +  N   A +VL K  +Y       R   + R +L+PL++IR+A   FG +
Sbjct: 467  LLAGTWHRNYLNNVQHADTVLTKVNQYKEQFPTSRSLASQREVLDPLNKIREATLEFGFF 526

Query: 544  RAAWPGVADLGLYQGRTIGPTVDEAYLSLLSRRFLPALASGVIEAMDAAPPGSEQQMAAL 603
            R     ++D GLYQG TIGP V+E YL+LL  RFLP L +  I A++ A    E+++A L
Sbjct: 527  RDKPQYISDFGLYQGHTIGPKVEETYLNLLETRFLPLLMADTIVALNQAET-DEEKLAVL 585

Query: 604  RVYRMLEDRRNRRAEWVEDWMARQWQQAFPGQGQLQRDLMRHLKYALTYADTD------- 656
            RVYRML D+  R  ++V D+ A+ WQ++F GQ Q+Q +L+ HL YA+ + D         
Sbjct: 586  RVYRMLVDKSGRYQDYVMDYFAKYWQKSFSGQRQIQEELLGHLDYAMRHTDLTAERLNGD 645

Query: 657  ------LPQYRQRVSHVQQTLRKVPLPQRVYAGLKQQAQEQLHTGLDLRHQVGPAFDVVY 710
                  +  Y + ++  Q  L  +P  QRVY  LK  AQ  L   ++LR  +GP FDVV+
Sbjct: 646  KGAEQVMRPYDKVIARAQVELGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVF 705

Query: 711  QLSSGSSQGDNGVLLAPMLTAKGFKEYFEPRSQRFTEMAMIDQWALGERAQLDYSDADQA 770
            +    +S   + + +  MLT +GF +YF P+S+  +E+A+ID W LG+     +S+AD+ 
Sbjct: 706  EERVLNS---SSLFIPQMLTKRGFDDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQ 762

Query: 771  ALNERLRNLYSADYIDSWRRALNAFSVADFRDLDHGVTILEQLAGPAAPLHRLLETVRDN 830
            AL E++R+LY ADY ++WR ALN   V  F D++  V +LE +     P+ RLL T+ DN
Sbjct: 763  ALREKIRDLYVADYTNTWRAALNEIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDN 822

Query: 831  SSLLSPVNVGVADEAPSPVSINSKPEQQQALVIQRAFAGLSAMLHAAGEKPSYYDETHAA 890
            + L S +     DE+     + S P+ + A +I+  FA L+ ML   G KP+Y  E  A+
Sbjct: 823  TQLYSAL---PKDESALKELLKS-PKYKVASMIETPFADLNGMLKPVGSKPAYMTEVLAS 878

Query: 891  IVAVHDYAKAVQGSPDRGKAALHAVHQRFSMTGHDPIGTLQRVATGLPEPINHHVRKVAH 950
            +  +  Y K++Q +PD G AAL A   R  +   DPI TL+R+++GLP+P++  + K+A 
Sbjct: 879  VDELKSYLKSIQDAPDVGMAALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLAD 938

Query: 951  QTAQVLNVEALRELERRWDAEVYSFFQQRLAERYPF-VVRAPDASLEDFEAFFGPNGRLQ 1009
            ++  V+  EA++ LE RW  +VY  FQ +LA RYPF      D +L DFEAFF PNG L 
Sbjct: 939  ESWYVVKQEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLD 998

Query: 1010 QFQDQYLKLFLKDNLEALQNGLQGRSLIRTDVIEQLERADRIRETFFDQRGNLSVQFSIE 1069
             F +Q LK+F+ +N+    +    +S+IR +V++Q+++A +IRE FF+++G L V FS+E
Sbjct: 999  NFYNQQLKMFIDENISVASDD-SAQSIIRKEVLDQIKQAQKIREAFFNRKGILDVSFSVE 1057

Query: 1070 PLGLSANQRTSLLDLDGQLISYTHGPSQITGIVWPNTLGQHVRSNLTLLRQNGNSS--SL 1127
            PL LS N+R S+L++DGQ ++Y+HGP +   ++WPNTL     S +TL+    N S  SL
Sbjct: 1058 PLSLSNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSL 1117

Query: 1128 EYRGPWSMFRLLSRGALNGRTATSVDLSFKTGDGVMRYRLNAEKAFNPITQQPFKGFRLP 1187
            + +GPW+ FRLL +G +   + TSVD  F    G M YR+NAE   NP T++ FK F+L 
Sbjct: 1118 QIQGPWAFFRLLDQGDVVSASQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSFKLS 1177

Query: 1188 RGL 1190
            + L
Sbjct: 1178 KTL 1180