Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 669 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  272 bits (695), Expect = 5e-77
 Identities = 197/590 (33%), Positives = 276/590 (46%), Gaps = 59/590 (10%)

Query: 60  TLYSADRPLRHVHGLVSAFSQGETGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQIL 119
           T    D  LR +  LV+   Q        RY  ++ P L    L SN R+FQ      I+
Sbjct: 61  TTLHKDALLRPLDWLVAEIRQLPADATAERYQLLLRPWLWWLSLASNNRVFQNLATSDIV 120

Query: 120 ELMFKRQGITRFELKSSAQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLI 179
             +FK  G T F+LK +  +  RE+CVQ  ETDL F+ RL  EEG  + F H    HTL+
Sbjct: 121 TTIFKAHGFTDFQLKLTGSYTPREYCVQYSETDLAFVSRLLEEEGIFWFFTHEEGTHTLV 180

Query: 180 VTDRLLSFGLLSRGALKAEDDEALWLDEDDVGPDKVLYHASSGGDQARACLRRLRYCEQV 239
           + D   +F  +  G                     V Y     G++    +R  + C Q 
Sbjct: 181 LADSNDAFAPIPNGPT-------------------VNYLGQRIGERELHGIRSGQVCLQA 221

Query: 240 RTARQVQRDYTFTNPAYRQEHKAQTSGVTHQSLDYERFDYPGRYKRDAVGKPFTETRLTA 299
                   DY FT P       +Q   V   S  YE   +PG Y   A G   T+ R+  
Sbjct: 222 VAGVYQATDYEFTTPT--TSLYSQAEAVAGPSSVYE---HPGGYTAKAQGDALTKQRVDG 276

Query: 300 LRHDACLAEVQGDDVRLQTGLSFTLVGHPREDLNVHWRVISLCHEGTQLTSLQEEAAGAE 359
           LR        + D   L  G  FTL GH    LN+ W V S+ HE +             
Sbjct: 277 LRSQEQRFVGESDCRWLVPGYWFTLAGHEDTTLNIDWVVTSVSHEASH------------ 324

Query: 360 QGTRYVNDALLVQGMAEWRPAPMA-KPRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWD 418
               Y N    +     +RP  +  KPR+     A VVG  GEEI+ DE+GR+K+ FPWD
Sbjct: 325 --DSYRNRFEAIPKATVYRPPRLTPKPRMY-TQTALVVGKAGEEIWTDEYGRIKLQFPWD 381

Query: 419 RESKNNEFSSCWVWVSQGWAGGSWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQL 478
           R  KN+E SSCWV V   W+G  +G   +PRIGQ+VIV +++GDPD+P++TG  Y GD  
Sbjct: 382 RTGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNA 441

Query: 479 PPYDLPDHKTRMTIKSQTHK-GDGFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIG 537
            PY LP ++T+  IK+Q+ K G GFNELRFED+   +EVF+ A++D N  V ++ T  +G
Sbjct: 442 LPYALPANQTQSGIKTQSSKGGGGFNELRFEDKKDAEEVFLQAQKDFNINVLNDTTATVG 501

Query: 538 NDRSERVEHDEVVDI-GGNRSVKVGASKRE-TVALGKVESIGLGKSLAVGGALSVMVGLE 595
           +D +  V++     +  G+ +V +   KR  T+  G         SL V    +V VG +
Sbjct: 502 HDETLTVQNARTRTVKDGDETVTLEKGKRSVTIQTG-------SDSLDVKDTRTVTVGSD 554

Query: 596 ATEQVALDKRVQVGGQLRVDADEDVSITSHHGHVHIDSRTSLTLSCGGAF 645
            T     +   +V G   +  D         G++ I    +LTL  GG+F
Sbjct: 555 QTHSTGGNYEHKVTGNYSLTVD---------GNLTIKVSGTLTLQSGGSF 595