Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 741 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  332 bits (852), Expect = 3e-95
 Identities = 206/617 (33%), Positives = 322/617 (52%), Gaps = 37/617 (5%)

Query: 23  SFKLDETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSAFSQGE 82
           S +  E L + F   L+L S +  I F  +L KP   TL   D   R+ HG+V +  Q  
Sbjct: 25  SMEGSEELGRLFHYELDLTSEDRAITFDQLLGKPMGLTLELYDGGKRYFHGIVCSCRQLT 84

Query: 83  TGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITRFELKSSAQHQVR 142
                  Y   + P        S+ RIFQ KTVP I++ +F+  G + FE   S  ++  
Sbjct: 85  GHGQFAGYRVSLRPWFWLLTRTSDCRIFQNKTVPDIIKQVFRDLGFSDFEDSLSGSYREW 144

Query: 143 EFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGALKAEDDEA 202
           E+CVQ  ET  DF+ RL  +EG  Y F H   +H L++ D   ++G  S  A    D E+
Sbjct: 145 EYCVQYRETSFDFVSRLMEQEGIYYYFRHDKSRHVLVLAD---AYGAHSTAA----DYES 197

Query: 203 LWLDEDDVGPDKVLYHASSGGDQARACLRRLRYCEQVRTARQVQRDYTFTNPAYRQEHKA 262
           +        PD+ +       D   A         +V+       DY F  P    E ++
Sbjct: 198 V----PFYPPDRQMRERDHFYDWQLA--------REVQPGSLALNDYDFLRPRASLEVRS 245

Query: 263 QTSGVTHQSLDYERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDDVRLQTGLSF 322
                TH + DY  +DYPG Y +   G  +  TR+ A+       +++G    +  G  F
Sbjct: 246 SVPR-THTNADYPLYDYPGEYVQSNDGDHYARTRIEAIHSQFERVQLRGRARGIGCGHVF 304

Query: 323 TLVGHPREDLNVHWRVISLCHEGTQLTSLQEEAAGAEQGTRYVNDALLVQGMAEWRPAPM 382
           TL G+ R D N  + V++  +   Q+     E+  ++   ++V++   +     +RP P+
Sbjct: 305 TLTGYDRADQNREYLVVAARY---QIRQDAYESGQSDVAEQFVSELDCMDANQAFRPLPL 361

Query: 383 A-KPRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWVSQGWAGGS 441
              P + GP  A VVGP GEEI+ D++GRVKV F WDR  ++NE SSCW+ VSQ WAG +
Sbjct: 362 TPMPIVRGPQTAVVVGPSGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWIRVSQAWAGKN 421

Query: 442 WGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIKSQTHKGD- 500
           WGS+ +PRIGQ+VIV ++ GDPD+P+ITGR Y  +Q  PY LP + T+  +KS++ KG  
Sbjct: 422 WGSVQLPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYGLPANATQSGVKSRSSKGGS 481

Query: 501 --GFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVV-------- 550
              FNE+R ED+ G +++FIHAE++Q+  V+++ET  +G+DR + +++DE V        
Sbjct: 482 PANFNEIRMEDKKGAEQLFIHAEKNQDIEVENDETHWVGHDRRKTIDNDETVHVKHDRTE 541

Query: 551 DIGGNRSVKVGASKRETVALGKVESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVGG 610
            +  N ++ +G  + E V   +  SIG+ ++  VG    + +G   TE V  ++ + +G 
Sbjct: 542 TVDNNETITIGVDRTEKVGNNETISIGVNRTEKVGSDEKITIGANRTENVGSNETITIGA 601

Query: 611 QL--RVDADEDVSITSH 625
               +V A+E +SI S+
Sbjct: 602 DRTEKVGANEKISIASN 618



 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 12/143 (8%)

Query: 514 QEVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVVDIGGNRSVKVGASKRETVALGKV 573
           +++ I A R +N  V  NET  IG DR+E+V  +E + I  NR+  VG ++   ++  + 
Sbjct: 579 EKITIGANRTEN--VGSNETITIGADRTEKVGANEKISIASNRTEDVGGNETIGISGNRN 636

Query: 574 ESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVGGQLRVDADEDVSITSHHGHVHIDS 633
           E++   + + + G  S  +G   +  VA ++   +     +D  +  S+T         +
Sbjct: 637 ETVQGNEGIEISGNQSTQIGQNESRDVAQNRTTNIKQNDSLDVGKHFSLT---------A 687

Query: 634 RTSLTLSCGGAFIKL-SDGRIEI 655
             S++L+ G A I +  DG I I
Sbjct: 688 GDSISLTTGDASITMKKDGTIMI 710