Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 941 a.a., Rhs element Vgr protein from Dechlorosoma suillum PS

 Score =  179 bits (455), Expect = 5e-49
 Identities = 167/597 (27%), Positives = 261/597 (43%), Gaps = 100/597 (16%)

Query: 15  GRTEFEVVSFKLDETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGL 74
           G  E   V  + +E+++  + + +  +S ++ ++   ++ + A   L  AD   + + GL
Sbjct: 33  GSEELLPVEARGEESVSGDYRVEVGCLSPDTHLELKQLIGRIAELNLLLADGGHKTISGL 92

Query: 75  VS-AFSQGETGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQ------- 126
           ++ A  +G  G   +R+  V+ P L+    R+N R+FQ K+VP+I+  +           
Sbjct: 93  IAEARHEGADGGF-SRFALVIVPGLSLLTHRTNSRVFQDKSVPEIVHTLLSEHRDAGGPW 151

Query: 127 -GITRFELKSSAQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLL 185
               R++ + +  +  R +C+Q  E+D DFI RL AEEG   R+E               
Sbjct: 152 AAACRWQNRLAKDYPQRSYCLQYRESDRDFIRRLLAEEGIATRYEFQEED---------- 201

Query: 186 SFGLLSRGALKAEDD----EALWLDEDDVGP-----DKVLYHASSGGDQARACL-----R 231
                S G  + +DD      L L +D   P     +K+ +H +   ++A +       R
Sbjct: 202 -----SSG--QRQDDATPLHTLVLFDDPYEPTPAQQEKIRFHRADASEEADSLTAWDTAR 254

Query: 232 RLRYCEQVRTARQVQRDYTFTNPAYRQEHKAQTSGVTHQSLD-------YERFDYPGRYK 284
           RLR  +    ++ +  DY    P      +A   G T Q           E +D    Y 
Sbjct: 255 RLRSGK----SQLLAWDYKPVTPL-----QADAPGTTDQGEQGGQVESRLEAYDPQAHYY 305

Query: 285 RDAVGKPFTETRLTALRHDACLAEVQGDD-VR-LQTGLSFTLVGHPRED----------- 331
                     T+L     D    + QG   VR L  G  F L  HPR +           
Sbjct: 306 GADNDDLSRYTQLRQDSRDRAAKDYQGQSSVRGLTAGQWFQLEDHPRHEGEDDDSRRFLV 365

Query: 332 --LNVHWR----------VISLCHEGTQLTSLQEEAAGAEQGTRYVNDALLVQGMAEWRP 379
             LN H R          +  L            +AAGA     Y N    V+      P
Sbjct: 366 RHLNWHARNNLPGDLTDGLPGLLASAAGQHGTASDAAGATGDQPYRNTFTAVRRDTPIAP 425

Query: 380 --APMAKPRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKN-------NEFSSCW 430
             AP  KP   GP  ATVVGP GEEI+ D+ GR+K+ F W RE  +       ++ SSCW
Sbjct: 426 DYAPYQKPTAKGPQTATVVGPQGEEIHTDDLGRIKIQFHWAREQDHPDGGAALDDRSSCW 485

Query: 431 VWVSQGWAGGSWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPY-----DLPD 485
           + V+  W G +WG   +PRIGQ+V+V+++ GD D+P++    Y G   PP       LP 
Sbjct: 486 IRVAVPWGGANWGHQYLPRIGQEVLVEFLEGDIDRPVVMAGLYNGSHRPPTYSGAGSLPA 545

Query: 486 HKTRMTIKSQTHKGDGFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGNDRSE 542
           ++T   IKS+ +KG+G+NEL F+D  G     + +E  +    +HN+  LI + RSE
Sbjct: 546 NRTLAGIKSKEYKGNGYNELLFDDSTGELRAKLSSEHGK---TQHNQGYLI-HPRSE 598



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 584 VGGALSVMV-GLE---ATEQVALDKRVQVGGQ---LRVDADEDVSITSHHGHVHIDSRTS 636
           VG ++S+ V G++   A +  A   +V V  Q   + +  D+ +++ S    +  +++  
Sbjct: 770 VGQSISLFVQGIKDKTAIKLYAARGKVDVQAQSDSIEITGDDSLTVISSDDRIFANAKEH 829

Query: 637 LTLSCGGAFIKLSDGRIEIGCPEPLLLHA-IAQVKAPARYGVP----PAPEQDEIEFRLV 691
           +T +CGGA+IK++ G I+I CP      A   +++ P          P  + DE  F L 
Sbjct: 830 ITFACGGAYIKIAGGNIDIHCPATASFKAGDYKIEGPTSLAQEMNSWPDGKFDE-GFVLQ 888

Query: 692 HADGTPIAGTAYVATLSDGTQRQGVVDQNGYARL 725
             +G P+    +     +GT+ +G  D  G   L
Sbjct: 889 QENGKPVVNRRFEIIRENGTKLRGQTDAQGQTGL 922