Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

 Score =  447 bits (1151), Expect = e-130
 Identities = 260/653 (39%), Positives = 379/653 (58%), Gaps = 24/653 (3%)

Query: 2   RLFLCEKPSQAKDIAKVLGA-NRKGDGCWQ--GTDICVTWCIGHLLETAPPDSYDERYKR 58
           RLF+ EKPS A+ IA  L   ++K  GC +    DI VTWCIGHLLE   PD+YDERYK+
Sbjct: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDI-VTWCIGHLLEQVEPDAYDERYKK 61

Query: 59  WNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR 118
           WN+ADLPIIP++W++  +  ++ Q   V++LL EA +++ A D DREG+++  E++++C+
Sbjct: 62  WNMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCK 121

Query: 119 Y----RGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLF 174
                +  VQRL +S L+ +++++AL  L    E   L  SAL RSRADWL GMNMSR +
Sbjct: 122 VPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAY 181

Query: 175 TLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAID--VQLEHAGQRFN-- 230
           TLLG+++GYQGVL VGRVQTP L LVV RD  I +F+P  ++ +D  +  ++  + F+  
Sbjct: 182 TLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIR 241

Query: 231 AQWRAPEDAC----DDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLG 286
           A+W+ P +AC    D++GR   + L    A+ I +   A   +   ++ ++AAPLP+ L 
Sbjct: 242 ARWK-PSEACLPWQDEEGRVTNRKLVDNVASRIANQ-PATVTESEQDQTKQAAPLPYSLS 299

Query: 287 TLQELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRAD 346
            LQ   +K++   AQ+ LD+ Q+LYE HKLITYPRSDC YLP+   A+AP ++AA+    
Sbjct: 300 ALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNA 359

Query: 347 ASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQ 406
             +       +   RS+AWND+KV AHH IIPT   +  + L      VY LI  +YL Q
Sbjct: 360 QEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQ 419

Query: 407 FLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALRE 466
           F P   Y   +  F+ AG    A G+Q++  GW+      LT  +  +      +P L  
Sbjct: 420 FYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWK-----VLTGQQDEQEECVDKVPPLPV 474

Query: 467 GQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRA 526
           G        ++K   T+PP+ FTE  L++AM  +A+ V D  LK+ L+ET G+GTEATRA
Sbjct: 475 GIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRA 534

Query: 527 SIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLE 586
            I+  L  RG L ++ K + +TPA   LI A+P     P  TA WE  L  +       +
Sbjct: 535 GILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQ 594

Query: 587 EFVARQSAWMGKLVERCSGMRMTISGPAAGA-APPWKKKRRGGGKSKATGSKA 638
            F+      + +L+E+     + +S  A  A + P  K+ R   KSKA   KA
Sbjct: 595 PFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKSKARTYKA 647