Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

 Score =  129 bits (323), Expect = 7e-34
 Identities = 149/554 (26%), Positives = 236/554 (42%), Gaps = 80/554 (14%)

Query: 56  YKRWNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIA---RE 112
           Y  W  A+  I+P K K++ +         +++L  +A  + +ATD DREGE IA   RE
Sbjct: 84  YHGWQ-ANYQILPGKEKVVAE---------LQKLAKDADSVYLATDLDREGEAIAWHLRE 133

Query: 113 LV--EHCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNM 170
           ++  +  RY+    R+  + +   +I++A  +  PG    +  ++   R   D ++G  +
Sbjct: 134 IIGGDEKRYK----RVVFNEITKNAIQQAFKQ--PGELNMDGVNAQQARRFMDRVVGFMV 187

Query: 171 SRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFN 230
           S L      +      L  GRVQ+  ++L+V+R+R I  FVP  FW I+     A ++  
Sbjct: 188 SPLLWKKVARG-----LSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDF 242

Query: 231 AQWRAPEDACDDQGRCLKQSLAQQAAADIGHAGTAR--AVKVATERVREAAPLPFDLGTL 288
               A +D     G   K     +A A +     A+    K   +        PF   TL
Sbjct: 243 RLLVAQKD-----GLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTL 297

Query: 289 QELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAA--LQRAD 346
           Q+  S + G G ++T+ +AQ LYE    ITY R+D   L     AEA   L     +   
Sbjct: 298 QQAASTRLGYGVKKTMMLAQRLYEA-GYITYMRTDSTNL----SAEAVENLRGYITKHYG 352

Query: 347 ASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIP---TAAASDPSRLPAKHKAVYTLIRARY 403
            +  P QP +   +++         AH  I P   T  A D   + A    +Y LI  ++
Sbjct: 353 EAYLPSQPNVYGSKQNAQ------EAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQF 406

Query: 404 LAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPA 463
           +A  +   +YD T      A + L+A G+ +   GW R       P    E    Q+LP 
Sbjct: 407 VACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTR----VQRPLGKNE---DQILPP 459

Query: 464 LREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEA 523
           ++ G    +  L  K  +T+PP  +TE  L+K +                 E  GIG  +
Sbjct: 460 VKVGDSLKLVSLDPKQHFTKPPARYTEAALVKEL-----------------EKRGIGRPS 502

Query: 524 TRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIAD---PGTTAIWEQALDMVQS 580
           T ASII  + DRGY+  + +   A      + D +     D      TA  E+ LD +  
Sbjct: 503 TYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAE 562

Query: 581 GEM----PLEEFVA 590
           GE+     L+EF A
Sbjct: 563 GEVNWTAVLDEFFA 576