Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 898 a.a., type I DNA topoisomerase from Synechocystis sp000284455 PCC 6803

 Score =  157 bits (396), Expect = 3e-42
 Identities = 176/610 (28%), Positives = 268/610 (43%), Gaps = 76/610 (12%)

Query: 2   RLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLET-APPDSYDERYKRWN 60
           +L + E P++A+ I   L             D  V   +GH+ +  A  +     YK  +
Sbjct: 3   KLVIVESPTKARTIRNYLPQ-----------DYRVEASMGHVRDLPASAEEVPAAYKDKS 51

Query: 61  LADLPI-IPDKWKML-VKPKTASQFKAVKRL---LGEARELVIATDADREGEMIARELVE 115
            A+L + + D +  L V PK  S+ K VK L   L  A E+++ATD DREGE I+  L++
Sbjct: 52  WANLGVNVEDHFSPLYVIPK--SKKKVVKELQTALKNADEVILATDEDREGESISWHLLQ 109

Query: 116 HCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFT 175
             + + P++R+    +   +IR AL       E  NL H+   R   D L+G  +S    
Sbjct: 110 LLQPKVPIKRMVFHEITQEAIRSALENCRDIDE--NLVHAQETRRILDRLVGYTLS---P 164

Query: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRA 235
           LL ++  +   L  GRVQ+  +RL+V R+R+   F    +W +  +LE     F A+   
Sbjct: 165 LLWKKIAWG--LSAGRVQSVAVRLIVQRERARRAFKTAGYWDLKAELEQNKNPFQAKLMT 222

Query: 236 --------PEDACDDQGRCL--KQSL----AQQAAADIGHAGTARAVKVATER--VREAA 279
                     D   + G  L  KQ +    AQ  A      G   AV    E+  VR+ +
Sbjct: 223 LGGTKLANGSDFDPNTGALLPDKQVVVLDEAQAIALKERLTGKPWAVVNTEEKPGVRKPS 282

Query: 280 PLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAIL 339
           P PF   TLQ+  ++K G+ A++T+ +AQ LYE    ITY R+D      S H    A+ 
Sbjct: 283 P-PFTTSTLQQEANRKLGISARDTMRVAQKLYE-EGYITYMRTD------SVHLSDQAVT 334

Query: 340 AALQRADASLAPLQPYLEPQ-RRSRAWNDAKVSAHHGIIPTAA---ASDPSRLPAKHKAV 395
           AA           + YL PQ ++    +     AH  I P        + + L  +  A+
Sbjct: 335 AARNCVQQMYG--KEYLSPQPKQYTTKSKGAQEAHEAIRPAGTEFRIPNQTGLKDRELAL 392

Query: 396 YTLIRARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREA 455
           Y LI  R +A  + +    +            RA GK+I  PG+ RA  E          
Sbjct: 393 YELIWKRTVACQMADARITQLSVLLKVEDAEFRAAGKRIDFPGYFRAYVEGSDDPDAALE 452

Query: 456 PPAQVLPALREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKE 515
               +LP L+ G   N   +      TQPP  +TE  L+K +                 E
Sbjct: 453 NQEVILPPLKVGDRPNCREIDTVGHETQPPARYTEASLVKTL-----------------E 495

Query: 516 TTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAF---SLIDAVPRAIADPGTTAIWE 572
           + G+G  +T ASII  ++DRGY+    KAL+ T  AF   SL+++    + D G T+  E
Sbjct: 496 SEGVGRPSTYASIIGTIIDRGYVQMRSKALTPTFTAFAVVSLLESHFPDLVDTGFTSRME 555

Query: 573 QALDMVQSGE 582
           Q LD +  G+
Sbjct: 556 QKLDEIAIGK 565