Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 694 a.a., DNA topoisomerase III (RefSeq) from Shewanella amazonensis SB2B

 Score =  426 bits (1094), Expect = e-123
 Identities = 261/657 (39%), Positives = 367/657 (55%), Gaps = 22/657 (3%)

Query: 1   MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQ-GTDICVTWCIGHLLETAPPDSYDERYKR 58
           M L++ EKPS  + IA+VL   ++KG+G  + G   CVTWCIGHLLE A PD+Y   YK+
Sbjct: 25  MILYIAEKPSLGRAIAEVLPKPHKKGEGYIELGNGDCVTWCIGHLLEQAEPDAYSPEYKQ 84

Query: 59  WNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR 118
           W LA LPIIP +WK+  +    SQ   VKRL+ +A  LV A D DREG+++  E++ H +
Sbjct: 85  WQLAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQASSLVHAGDPDREGQLLVDEVISHAK 144

Query: 119 YRGP----VQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLF 174
                    QRL +S L+  ++R+AL +L    E   L  SAL RSRADWL G+NM+R +
Sbjct: 145 VSASKLASTQRLLISDLNPDAVRRALGQLRSNKEFVPLATSALARSRADWLYGLNMTRAY 204

Query: 175 TLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLE-HAGQRFNAQW 233
           TL GR+ GY GVL VGRVQTP L LVV RD  I +F P   + +   +    G+ F A+W
Sbjct: 205 TLQGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHFEPKDHYEVLAHITTDKGESFCAKW 264

Query: 234 RAPEDAC----DDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQ 289
           + P +AC    D++GR L + LA+   + IG    A    V+ +  ++A PL + L  LQ
Sbjct: 265 Q-PSEACQPYMDEEGRVLSRRLAETVVSRIG-GKPALVEHVSHKDKKQAPPLLYSLSALQ 322

Query: 290 ELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASL 349
             C+K+FG+ A+E LD AQ+LYE HKLITYPRSD  +LP+ Q A  P +L+A+      L
Sbjct: 323 IDCAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDVLSAVSANAPEL 382

Query: 350 APLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLP 409
               P  +    S+AW+D+KV AHH I+PT   +  S+L  + + +Y  I  +YLAQF P
Sbjct: 383 LEGAPSPDLHLVSKAWDDSKVDAHHAIVPTGKRTALSQLNQRERQLYLHIARQYLAQFYP 442

Query: 410 NHEYDRTQADFDCAGHALRAVGKQIVEPGWR-------RALPEALTPAKGREAPPAQVLP 462
           N     T+      G +  A       PGWR           EA  P +  +A     LP
Sbjct: 443 NRLLADTEIQLIIEGGSFIARASVERAPGWRVLFQGRSTEQDEAKEPQE-TDASQKTPLP 501

Query: 463 ALREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTE 522
           AL +G        +L    TQPPK FT+  L+ AM  +A+ V  P +K+ LK+T G+GTE
Sbjct: 502 ALNKGDIARCCHGELLAKQTQPPKHFTDATLLSAMTGIARYVSSPDIKRILKDTDGLGTE 561

Query: 523 ATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGE 582
           ATRA II+ L  RG+LV+ GK++ A+ A   LI ++P        TA+WE+ L  +   +
Sbjct: 562 ATRAGIIELLFKRGFLVRQGKSIVASQAGRGLIASLPEVATTADMTALWERQLSDICQRQ 621

Query: 583 MPLEEFVARQSAWMGKLVERCSGMRMTISGPAAGAAPPWK-KKRRGGGKSKATGSKA 638
           +  + F+      + KL+E+ +    T       A P    + R G GK +A G+ A
Sbjct: 622 LSYKGFMTPLVLELEKLIEQAAASLPTALAGVTAAGPKRSFRGRAGKGKGRAPGASA 678