Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 900 a.a., DNA topoisomerase TopA from Phaeobacter inhibens DSM 17395

 Score =  134 bits (336), Expect = 2e-35
 Identities = 176/651 (27%), Positives = 263/651 (40%), Gaps = 105/651 (16%)

Query: 1   MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN 60
           M + + E P++AK I K LG+           D  V    GH+ +    +   E    + 
Sbjct: 1   MPVVVVESPAKAKTINKYLGS-----------DYTVLASYGHVRDLPAKNGSVEPDDDFA 49

Query: 61  LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR 120
           +         W+  V   +    KA+   L +   L++ATD DREGE I+  L E    R
Sbjct: 50  MT--------WE--VGADSRKHVKAIADALKDDNALILATDPDREGEAISWHLQEALTKR 99

Query: 121 GPVQ------RLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLF 174
             ++      R+  +A+   ++ +A+    P      L  + L R   D+L+G N+S   
Sbjct: 100 RSIKKDTAVSRVTFNAITKEAVTEAMKN--PRQVDLPLVEAYLARRALDYLVGFNLS--- 154

Query: 175 TLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHA-GQRFNAQW 233
            +L R+    G    GRVQ+  LRL+V+R+  I  F P  +W++   L    GQ F A+ 
Sbjct: 155 PVLWRK--LPGARSAGRVQSVCLRLIVEREMEIEAFKPQEYWSVKASLATPRGQEFEARL 212

Query: 234 RA-PEDACDDQGRCLKQSLAQQAAADIG-HAGTARAVKVATERVREAA---PLPFDLGTL 288
                D  D      K +LA   AA++   A  +RA+ V +   + A+     PF   TL
Sbjct: 213 TVLGGDKLD------KYALANSTAAELAVQAVASRALTVQSVEAKPASRNPSAPFMTSTL 266

Query: 289 QELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADAS 348
           Q+  S+KFG+GA++ ++ AQ LYE    ITY R+D   +      EA A +A   R  A 
Sbjct: 267 QQEASRKFGMGAKQCMNAAQRLYEA-GYITYMRTDGIDMAPEAVQEARAEIA--NRYGAE 323

Query: 349 LAPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAK---HKAVYTLIRARYLA 405
             P  P +   +   A       AH  I PT    D   L       + +Y LI  R LA
Sbjct: 324 YVPGSPRIYKNKAKNA-----QEAHECIRPTEMGRDAKSLKVSEDDQRKLYDLIWKRTLA 378

Query: 406 QFLPNHEYDRTQADF--DCAGHALRAVGKQIVEPGWRRALPEALTPA------------K 451
             +     +RT  D   +     LRA G+ ++  G+ R   E                 +
Sbjct: 379 CQMEGARLERTTVDIGSNDGQVVLRATGQVMLFDGFLRVYEEGRDDVVDDDDKRLPQIMQ 438

Query: 452 GREAPPAQVLPALREGQDCN---------VHGLQLKDLWTQPPKPFTEGDLIKAMKNVAK 502
           G     A  L A  E  D           V GLQ     TQPP  FTE  L+K M     
Sbjct: 439 GESLKFAASLAAQAEKADTGGAILSDDKAVLGLQHH---TQPPPRFTEATLVKRM----- 490

Query: 503 LVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKAL----SATPAAFSLIDAV 558
                       E  GIG  +T AS+I  + DR Y+ K+   L            L++  
Sbjct: 491 ------------EELGIGRPSTYASVITTIQDREYVRKDKNRLFPEDKGRIVTIFLLNFF 538

Query: 559 PRAIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKLVERCSGMRMT 609
            R       TA  E  LD V +G+   ++ ++R        +   S +R+T
Sbjct: 539 -RTYVGYEFTANLEGELDDVSAGDRDYKDLLSRFWRDFSAAISETSDLRIT 588