Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 670 a.a., DNA topoisomerase III (RefSeq) from Shewanella loihica PV-4

 Score =  450 bits (1157), Expect = e-130
 Identities = 271/679 (39%), Positives = 388/679 (57%), Gaps = 41/679 (6%)

Query: 1   MRLFLCEKPSQAKDIAKVLGA-NRKGDGCWQGTD-ICVTWCIGHLLETAPPDSYDERYKR 58
           M L++ EKPS  + IA VL   ++KG+G     +   V+WCIGHLLE A PDSYD  +K 
Sbjct: 1   MILYIAEKPSLGRAIADVLPKPHKKGEGYITAANGDTVSWCIGHLLEQAEPDSYDPAFKS 60

Query: 59  WNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR 118
           W+   LPI+P +WKM  K KT  Q   +++L+ +A +LV A D DREG+++  E++ +  
Sbjct: 61  WSFDHLPIVPQQWKMTPKSKTRGQLSVLRKLVKQASQLVNAGDPDREGQLLVDEVIAYLG 120

Query: 119 YRGP----VQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLF 174
            +G      QRL +S L+  ++++AL +L    E   L  SAL RSRADWL GMNM+R +
Sbjct: 121 VKGDKLEQTQRLLVSDLNPQAVKRALGQLRSNREFIPLSTSALARSRADWLYGMNMTRAY 180

Query: 175 TLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQ-RFNAQW 233
           TL GR+ GYQGVL VGRVQTP L LVV RD +I +FV  PF+ +   L    Q  F A+W
Sbjct: 181 TLQGRKVGYQGVLSVGRVQTPLLGLVVRRDEAIEHFVSKPFYEVLANLYTQEQAHFKAKW 240

Query: 234 RAPEDAC----DDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQ 289
           + P +AC    D++GR L + LA+     I     A+   +  +  ++  PLP++L +LQ
Sbjct: 241 Q-PSEACQPYMDEEGRVLSRRLAENVVGRITEQ-PAKVTDLQAKDKQQGQPLPYNLSSLQ 298

Query: 290 ELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASL 349
              +K+FG+ A+  LD  Q+LYE HKLITYPRSD  YLP+ Q A AP+++ A+ +    L
Sbjct: 299 IDAAKRFGMSAKTVLDTCQSLYEKHKLITYPRSDSRYLPKEQLALAPSVIGAVLKGAGEL 358

Query: 350 APLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLP 409
                  + +  S+AWNDAKV AHH I+PT   ++ S L    K +Y  +  +YLAQF P
Sbjct: 359 TAQCAAPDLKIVSKAWNDAKVDAHHAIVPTEKVANLSALTQAEKQIYLQLARQYLAQFYP 418

Query: 410 NHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEAL---TPAKGREAPPAQVLPALRE 466
            + Y  TQ + + AG       KQ +  GW++  P+     T  +G EA     LP L +
Sbjct: 419 VYRYHETQVEVEIAGGHFHTKAKQEIALGWKQLFPKRSDDKTDGEGDEA--LAQLPPLHK 476

Query: 467 GQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRA 526
           GQ  +    +L +  TQPPK FT+  L+ AM  +++ V +P +++ LKET G+GTEATRA
Sbjct: 477 GQMLHSGQGELIEKQTQPPKAFTDATLLSAMTGISRYVTNPEIRKILKETDGLGTEATRA 536

Query: 527 SIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLE 586
            II+ L  RG+L + GK++ +TP    LI+++P +   P  TA+WE  LD +   E    
Sbjct: 537 GIIELLFKRGFLARQGKSIVSTPVGRGLINSLPESATTPDMTALWESHLDAISRKE---- 592

Query: 587 EFVARQSAWMGKLVERCSGMRMTISGPAAGA-----APPWKKKRRG---------GGKSK 632
              A+  ++M  LVE  +G+ M        A     AP    K+RG         G K K
Sbjct: 593 ---AKYLSFMAPLVESLNGLIMQAGAQLPKALQGVEAPKRSFKKRGYGNRRGTATGAKGK 649

Query: 633 ATGSKATPSKPRQARKKRA 651
           A+G+K T +  R A K RA
Sbjct: 650 ASGAKKTAA--RAASKTRA 666