Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score =  291 bits (744), Expect = 1e-82
 Identities = 207/645 (32%), Positives = 327/645 (50%), Gaps = 43/645 (6%)

Query: 3   LFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWNLA 62
           L + EKPS A+DIA  LG   K +  ++  D  V   +GHL+E A P++ D  +   +LA
Sbjct: 5   LIIPEKPSVAQDIAAALGGFSKREDWFERDDAIVCSALGHLVELACPEAEDPGF---DLA 61

Query: 63  DLPIIPDKWKMLVKPKTASQFKAVKRLLG--EARELVIATDADREGEMIARELVEHCRYR 120
            LP IP ++ +    KT+++   +K+L+   + + +V A DA REGE+I R +   C  R
Sbjct: 62  RLPAIPSRFNLAPIAKTSARLSLLKKLMNRQDVQLVVNACDAGREGELIFRYIYLCCGCR 121

Query: 121 GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLL-GR 179
            P+QR+W+ ++  A+I++A A+  PG E   L++SA  RS  DWL+G+N +R +++L  R
Sbjct: 122 KPMQRMWIQSMTPAAIKEAFAKRRPGAELDGLFNSAQSRSEGDWLVGINGTRAYSILETR 181

Query: 180 QSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQW-----R 234
            +G + +  VGRVQTPTL L+V R+ +I +F+  P++ I  +       + A+W     +
Sbjct: 182 VTGERTLSTVGRVQTPTLALIVAREEAIRSFIAKPYYEIQGEFAAKTGVYGAKWIDTAFQ 241

Query: 235 APEDACDDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSK 294
           A     D +   L       A           +V  AT       P  FDL TLQ   +K
Sbjct: 242 ADPSTPDARAERLFDKAKADAIVAKCTGKRPSSVADATTDSISTPPKLFDLTTLQREANK 301

Query: 295 KFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQ- 353
           KFG  A +TL IAQALYE  K++TYPR+D   LP+     A A L  L     +++P   
Sbjct: 302 KFGFSASQTLAIAQALYEKQKVLTYPRTDSSALPEDYLDTARATLTRLGDGGLTVSPFAA 361

Query: 354 ---PYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPN 410
                ++P +  R +N+AK+S H  IIPT   S  + L  +   ++ L+  R++A F P 
Sbjct: 362 KAVAMVKPDK--RIFNNAKISDHFAIIPTGLVS--ATLSGEEAKIFDLVSRRFIAAFFPP 417

Query: 411 HEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQ--VLPALREGQ 468
            +Y +T           RA G+ +VE GW            G+EA  ++   L A+ + +
Sbjct: 418 AKYLQTVRLTVVEQETFRASGRVLVEEGW--------LAVYGKEADDSEDPALCAVAKDE 469

Query: 469 DCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASI 528
                 ++   L T+PP  FTE  L+ AM++    ++D  L++ +K+  G+GT ATRAS 
Sbjct: 470 LPENRRIEAVSLKTKPPLRFTEATLLGAMESAGADIEDDELREAMKD-RGLGTPATRAST 528

Query: 529 IQGLLD---------RGYLVKNGKALSATPAAFSLIDAVPR----AIADPGTTAIWEQAL 575
           I+ LL          + Y+V+  K L+ T  AF L+  +      A+A   TT +WE  L
Sbjct: 529 IEALLADKDGKGRSIQPYVVREKKNLAPTNKAFKLVKFLRENGLTALASAETTGLWEFKL 588

Query: 576 DMVQSGEMPLEEFVARQSAWMGKLVERCSGMRMTISGPAAGAAPP 620
             ++ G     +F+   +A   + V R   +   +   AA  A P
Sbjct: 589 REMEKGRCQRSDFMGEIAALAREFVTRVQALAKDLPASAAMQAKP 633