Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

 Score =  160 bits (405), Expect = 2e-43
 Identities = 162/619 (26%), Positives = 262/619 (42%), Gaps = 78/619 (12%)

Query: 3   LFLCEKPSQAKDIAKVLGANRKGDGCW--------QGTDICVTWCIGHLLETAPPDSYDE 54
           L +CEKP+ AK IA+ LG  +K              G  I V   +GHL       +  E
Sbjct: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLY------TLQE 57

Query: 55  RYKRWNLADLPIIPDKW---KMLVKPKTASQF-KAVKRLLGEARELVIATDADREGEMIA 110
           + K     D P+    W     L + K   ++  A+K++  +A +  +ATD D EGE+I 
Sbjct: 58  KTKT-KFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIG 116

Query: 111 RELVEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNM 170
              +     +    RL  S+L    I KA     P    F L  +   R + DW  G+N+
Sbjct: 117 YHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGINV 174

Query: 171 SRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEH---AGQ 227
           SR              L  GRVQ P L  +VD++  I NFVP P+W ++  L++   A  
Sbjct: 175 SRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAVH 234

Query: 228 RFNAQWRAPEDACDDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGT 287
                W       ++Q     + +  Q  A      T   VK + + +      PFDLG 
Sbjct: 235 ELEKFWD------EEQANKAYEKVKGQKQA------TVSDVKKSMKTIPPNP--PFDLGA 280

Query: 288 LQELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADA 347
           LQ      F    ++T ++AQ LYE     +YPR+    LP  + A    +L  L +   
Sbjct: 281 LQREAHNMFRFSPKKTQEVAQKLYE-KGYCSYPRTSSQKLPDDK-AYMDEVLKNLSKNKN 338

Query: 348 SLAPLQPYLEPQRR--SRAWNDAKVSAHHGI-IPTAAASDPSRLPAKHKAVYTLIRARYL 404
               ++  L   R+  S   +D    A H + +P        +LP     +Y LI  R +
Sbjct: 339 YKPYIETILNENRKPISGKNDDPAHPAVHAVDVP------KEKLPDDELKLYELIARRTI 392

Query: 405 AQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPAL 464
           A +  N + + ++ + D  G   +  G + VE GW     E     K  E      LP L
Sbjct: 393 ALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWH----EIYYYTKFDEVE----LPEL 444

Query: 465 REGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEAT 524
           ++    NV+ +  +   T+PPK +T   +IK ++           K+KL      GT+AT
Sbjct: 445 KKNDVINVNNINFEAKETKPPKRYTMASIIKELE-----------KRKL------GTKAT 487

Query: 525 RASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR---AIADPGTTAIWEQALDMVQSG 581
           RA I++ L  RGY++++G +L+ T     + + + +    I +   T   E  L+++Q  
Sbjct: 488 RADILEKLTKRGYVIEDG-SLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDK 546

Query: 582 EMPLEEFVARQSAWMGKLV 600
           ++  EE +      + K++
Sbjct: 547 KIKKEEVIQETKDKLTKIL 565