Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  139 bits (349), Expect = 6e-37
 Identities = 146/557 (26%), Positives = 231/557 (41%), Gaps = 76/557 (13%)

Query: 86  VKRLLGEARELVIATDADREGEMIARELVEHCRYRGP-VQRLWLSALDDASIRKALARLL 144
           ++    +A  + +A D DREGE IA  +      +   ++R+  + +   ++R+AL    
Sbjct: 67  LREAAAKADTVYLAPDPDREGEAIAWHVAALIEGKADNIKRIQFNEITARAVREALEN-- 124

Query: 145 PGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRD 204
           P      L+ +   R   D L+G  +S L     ++      +  GRVQ+  LRL+VDR+
Sbjct: 125 PRDLNRALFDAQQARRVLDRLVGYKLSPLLWKKVKRG-----ISAGRVQSVALRLIVDRE 179

Query: 205 RSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDACDDQGRCLKQSLAQ-------QAAA 257
                F P  +W             N     P    D Q    K  LA+        A A
Sbjct: 180 SERRAFTPEEYWLFRAMFAK-----NVPGATPTSP-DPQYAPFKAELAKIDGKKAHVADA 233

Query: 258 DIGHA------GTARAVKVATERVREAAPLP-FDLGTLQELCSKKFGLGAQETLDIAQAL 310
           D  +A      G    +     + RE  P P F   TLQ+  +++ G  A+ T++IAQ L
Sbjct: 234 DAANALEDAMRGKPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNIAQRL 293

Query: 311 YE--------THKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEPQRRS 362
           YE        T  LITY R+D   +       A A +     AD    P +P     R+ 
Sbjct: 294 YEGVELGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGAD--FCPAKP-----RQF 346

Query: 363 RAWNDAKVSAHHGIIPTAAASDPSR----LPAKHKAVYTLIRARYLAQFLPNHEYDRTQA 418
           +    A+  AH  + P      P      LP     +Y L+ +R++A  +    +D T  
Sbjct: 347 KTKGSAQ-DAHEAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTV 405

Query: 419 DFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVHGLQLK 478
              C     RA G++++ PG+  A+P+       +E   A+ LP L+EG+  +   ++ +
Sbjct: 406 AIACGPAEWRAKGERMLFPGFLAAMPQ-------KEEGDAE-LPPLQEGETLHPVSVEKE 457

Query: 479 DLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYL 538
             +TQPP  +TE  L++ +                 E  GIG  +T ASII  L+DR Y 
Sbjct: 458 QKFTQPPARYTEASLVREL-----------------EERGIGRPSTYASIISTLIDRDYT 500

Query: 539 VKNGKALSATPAAFSLIDAVPR---AIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAW 595
               K    T    ++ D + R    + D G TA  E +LD V  G +   E ++R SA 
Sbjct: 501 RLEDKHFVPTDLGATVCDLLARHFTTLMDVGFTAQMEDSLDKVAEGGLDWVELLSRFSAD 560

Query: 596 MGKLVERCSGMRMTISG 612
               +E  +    T+ G
Sbjct: 561 FNPTLESAAKAMETVKG 577