Pairwise Alignments

Query, 374 a.a., tRNA-specific 2-thiouridylase MnmA from Pseudomonas putida KT2440

Subject, 351 a.a., putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  205 bits (521), Expect = 2e-57
 Identities = 128/354 (36%), Positives = 195/354 (55%), Gaps = 27/354 (7%)

Query: 18  MSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTEYCTAREDLADAQAVCDRIGIKLHT 77
           MSGG+DS+ + L+L EQGY++ G+ M+ W ++             DA+ +  R+GI+ + 
Sbjct: 1   MSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP-----------QDARELAARMGIEHYV 49

Query: 78  ANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLIATGHYVRR 137
           A+    + + + ++F++EYK GRTPNP ++CN   KF+   ++A  L    IATGHY R 
Sbjct: 50  ADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDCAYIATGHYSRL 109

Query: 138 RDTGALTELLKGLDPNKDQSYFLHAVGGQEIARTLFPVGELEKPEVRA-IAEKHGLATAK 196
            +      ++ G D  KDQSYFL  +G   + R +FP+G+  K +VR  +AEK   A +K
Sbjct: 110 EERSGHIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDYTKIKVREYLAEKGYEAKSK 169

Query: 197 KKDSTGICFIGERRFSDFLKQYLP-----AQPGDIETTEGEVIGRHHGLMYHTIGQRQGL 251
           + +S  +CFI +  + DFL++  P       PG    +EG  +G+H G  Y+TIGQR+GL
Sbjct: 170 EGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVNSEGVKLGQHKGAPYYTIGQRKGL 228

Query: 252 GIGGLKDASDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASEIFWVNPVDLGSPRQL 311
            I     A  +P YVL  +  +N +++G   +   L +  +LA +   V+  +L S   L
Sbjct: 229 EI-----ALGKPAYVLKINPQKNTVMLGDAEQ---LQTEYMLAEQDRIVDEQELFSCENL 280

Query: 312 TAKVRYRQSDQRCTLERTASGYRAV-FDEPQRAVTPGQSVVFYDGEVCLGGGVI 364
             ++RYR     C ++R   G   V F E   AV PGQS VFYDG   LGG  I
Sbjct: 281 AVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVAPGQSAVFYDGRRVLGGAFI 334