Pairwise Alignments

Query, 441 a.a., DNA-dependent ATPase required for recombination from Pseudomonas putida KT2440

Subject, 436 a.a., recombination factor protein RarA from Sinorhizobium meliloti 1021

 Score =  420 bits (1080), Expect = e-122
 Identities = 228/427 (53%), Positives = 290/427 (67%), Gaps = 8/427 (1%)

Query: 10  AQPLAARLRPSSLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQ 69
           A+PLA RLRP +L E  GQEHL      L   +  G+L SMIFWGPPG GKTT+ARLL+ 
Sbjct: 16  ARPLADRLRPRTLAEVTGQEHLTGPDGVLTRMIASGSLGSMIFWGPPGTGKTTVARLLSG 75

Query: 70  FCDAHFETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPYVE 129
                FE +SA+ +GV ++++  E A+ +    GR+T+LFVDE+HRFN++QQD+FLP +E
Sbjct: 76  EAGLAFEQISAIFSGVADLKKVFESARARR-MSGRQTLLFVDEIHRFNRAQQDSFLPVME 134

Query: 130 DGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTEERGLGKRNLRV 189
           DGT++ +GATTENPSFELN ALLSRARV   K  DEA+L +L+ RA   E     + L +
Sbjct: 135 DGTVILVGATTENPSFELNAALLSRARVLTFKPHDEASLEELLKRAEAAEG----KPLPL 190

Query: 190 GDDAFKMLMAAADGDGRRMLNFLENASDLAEDGSEIDVEMLQSLLGDSRRRFDKGGEAFY 249
            D+A   L+  ADGDGR +L   E     A      D   LQ ++      +DKG +  Y
Sbjct: 191 DDEARASLIRMADGDGRAVLTLAEEVWRAARREEIFDSAGLQEIVQRRAPVYDKGQDGHY 250

Query: 250 DQISALHKSVRGSNPDGALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPRALSLCLA 309
           + ISALHKSVRGS+PD ALY+  RM D G DPLYI RR+VRMA EDIG ADP+AL++C A
Sbjct: 251 NLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLADPQALAICNA 310

Query: 310 AWDVQERLGSPEGELAVAQAITYLACAPKSNAVYVGFKTALREAAEHGSLEVPLHLRNAP 369
           A D  + LGSPEGELA+A+A  YLA APKSNAVY  +K A+R A E+GSL  P H+ NAP
Sbjct: 311 AKDAYDYLGSPEGELALAEACVYLATAPKSNAVYTAYKAAMRAAKENGSLLPPKHILNAP 370

Query: 370 TKLMKQLGYGDEYRYAHDEPDAYAAGEDYFPDELEPRQYYQPVPRGLELKIGEKLRHLAD 429
           TKLMK  GYGD YRY HDEPDA+ +G+DYFP+++  + +Y P  RG E +I ++L     
Sbjct: 371 TKLMKGEGYGDGYRYDHDEPDAF-SGQDYFPEKMGRKTFYDPPERGFEREIRKRLEWWNK 429

Query: 430 L--DRNS 434
           L  DRNS
Sbjct: 430 LRRDRNS 436