Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 98/422 (23%), Positives = 170/422 (40%), Gaps = 64/422 (15%)

Query: 182 IYLFILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVANVVTT 241
           I  F+L GA + + GM R    FA  L G   GG + V++ +S   G I+GS +A+  + 
Sbjct: 58  IPFFVLAGAIMAEGGMARRLVAFAGVLVGFVRGGLSLVNITASTFFGAISGSSLADTASV 117

Query: 242 GQFTIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVPYAEVAKAALI 301
           G   IP M++ GY   F+  V  + S+ + L PP   +V + +A    V  A +  A + 
Sbjct: 118 GSVLIPEMEKKGYPREFSTAVTISGSVQALLTPPSHNSVIYSLAAGGTVSIAALFVAGIG 177

Query: 302 PALLYFGSVYWMVHLEARRSHLHGLPREQCPSAWDALR----QRWFLLVPLMVLVALLFS 357
           P LL   ++  +  L AR+      P+ +      AL+      W L+  +++L  +L  
Sbjct: 178 PGLLLSATMATLCLLFARK---RNYPKGEVVPLRQALKICVEALWGLMTMVIILGGILSG 234

Query: 358 GRTPLYSGMVGLALTAIVILGSAIILRAQKTWLRAAFWVALGILCSGFFRMGIGVILMVI 417
             T   S  V +     V +    I R  K       W  L  +     R  + +++++I
Sbjct: 235 VFTATESAAVAVVWAFFVTM---FIYRDYK-------WSELPRMLHRTVRT-LSIVMILI 283

Query: 418 AGLAIACCFVQGGRATLHACVMALAEGARHAVPVGIACALVGVIIGVISLTGLATTFAGY 477
           A             A     +M L +     +P  I  A + +                 
Sbjct: 284 A------------FAASFGYIMTLMQ-----IPSKITTAFLAL----------------- 309

Query: 478 ILDLGRDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFY 537
                 DN ++ L+      LVLG  +   P  +I + I  P ++  GV  +   M +  
Sbjct: 310 -----SDNRYVILMCINFMLLVLGTLMDMAPLILILTPILLPVVVSFGVDPVHFGMIMLV 364

Query: 538 FGILADLTPPVALACFAAAPIAK-----EKGLLISFWAVRIA--LAGFVVPFMAVYDPAL 590
              +  +TPPV    F  A I K         L+ F+A   A  +A   +P ++++ P++
Sbjct: 365 NLGIGLITPPVGAVLFVGAAIGKVTIENTVKALLPFYAALFAVLMAVTYIPMISLWLPSV 424

Query: 591 MM 592
           ++
Sbjct: 425 VL 426



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 371 LTAIVILGSAIILRAQKTWLRAAFWVALGILCSGFF-RMGIGVILMVIAGLAIACCFVQG 429
           + A+V+LGS I+L   +  +  A+ + L  L   ++  + +  +++ IAG       +  
Sbjct: 1   MDAVVLLGSFIVLILLR--VPVAYSLGLATLVGAWWIDIPLHAVMIQIAGGVNKFSLLAI 58

Query: 430 GRATLHACVMALAEGARHAVPVGIACALVGVIIGVISLTGL-ATTFAGYI 478
               L   +MA  EG      V  A  LVG + G +SL  + A+TF G I
Sbjct: 59  PFFVLAGAIMA--EGGMARRLVAFAGVLVGFVRGGLSLVNITASTFFGAI 106