Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

 Score =  367 bits (941), Expect = e-105
 Identities = 245/705 (34%), Positives = 365/705 (51%), Gaps = 74/705 (10%)

Query: 5   AQGLHASTDRWP--AALFAVALVFSVFQIATAA-------FPLISTQVLRAIHVGFLLLV 55
           AQ + A +   P  A +  +AL++S+FQ+  A+       F +++    R+IH+ F LL+
Sbjct: 13  AQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFVLGFGVLNDTETRSIHLAFALLL 72

Query: 56  VYLSY-SFVGHRRPWQPLAWL-LGLAGMATAAYQWYFEGDLIQRSGELTTSDLIVGLLLI 113
            +L+Y +F    R   PL  + LGL   A+AAY +     L QR G LTT DL+   + I
Sbjct: 73  AFLAYPAFKRSPRDRVPLVDIALGLVAAASAAYLFIAYSQLAQRPGNLTTMDLVTACIGI 132

Query: 114 GLVFEAARRVMGIALPIICALFLAYGLLGQHLPGELAHRGYGLDQIVNQLAFGTEGLYGT 173
            L+ EA RR +G  L II  +FL Y + G  +PG LAHRG     + N     TEG++G 
Sbjct: 133 PLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALANHQWITTEGVFGI 192

Query: 174 PTYVSATYIYLFILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGS 233
              VS ++++LF+LFGA LE+AG    F   A  + GH  GGPAK +V +S + G I+GS
Sbjct: 193 ALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTGLISGS 252

Query: 234 GVANVVTTGQFTIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVPYA 293
            +ANVVTTG FTIP+MKR G+    AG VE  SS+  Q+MPPVMGA AF+M E + +PY 
Sbjct: 253 SIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYV 312

Query: 294 EVAKAALIPALLYFGSVYWMVHLEARRSHLHGLPREQCPSAWDALRQRWFLLVPLMVLVA 353
           EV K A +PAL+ + ++ ++VHLE+ +  L  LPR      W    QR   L+  +   A
Sbjct: 313 EVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPW---MQR---LIGFVFGAA 366

Query: 354 LLFSGRTPLYSGMVGL-------------ALTAIVILGSAIILRAQK------------- 387
           L+      +Y G+  L             AL A+V LG   I  +               
Sbjct: 367 LISGLSLGVYYGLGWLKPLLGDSALWVIGALLAVVYLGLLKIAASNPPLPHEDPNMPLEK 426

Query: 388 ---------TWLRAAFWVALGILCSGFFRMGIG--------VILMVIAGLAIACCFVQGG 430
                    + L     V + + C    R+  G        ++++++        +++  
Sbjct: 427 LPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLLSWMRHD 486

Query: 431 RA----TLHACVMALAEG----ARHAVPVGIACALVGVIIGVISLTGLATTFAGYILDLG 482
           R+    T    V+ L EG    AR+ + +GIA A  G+I+G +S TG+    A  +  L 
Sbjct: 487 RSHPDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADLVELLS 546

Query: 483 RDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLELG------VPLIVSHMFVF 536
             NL L L+LT    L+LGMG+PT  NYI+ SS+ AP ++ LG      VPLI  H+FVF
Sbjct: 547 MGNLLLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVF 606

Query: 537 YFGILADLTPPVALACFAAAPIAKEKGLLISFWAVRIALAGFVVPFMAVYDPALMMQGDS 596
           YFGI+AD+TPPV LA FAAA ++K   +     A   +L    +PF+ +++  L++ G  
Sbjct: 607 YFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDLLLIGVD 666

Query: 597 MGSTLYMVIKAAFAVALWGCASIGHLRAPMPWWERLLAFAAGVSL 641
               + + I A  A+ ++   + G+      W+E +L      +L
Sbjct: 667 FWHGVLIFIVATIAMLVFAAGTQGYFLVRSRWYESVLLLLVAFTL 711



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 45/220 (20%)

Query: 459 GVIIGV-ISLTGLATTFAGYILDLGRDNLFLSLVLTML--------TCLVLGMGIP---- 505
           G+ +GV  S   L   F   +   G  + F+ L  +ML           V+  G+     
Sbjct: 191 GIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTGLIS 250

Query: 506 --TIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILADLTPPVALACFAAAPIAKEKG 563
             +I N + T +   P +   G     +        +   + PPV  A  AA  + +  G
Sbjct: 251 GSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGA--AAFLMVEYVG 308

Query: 564 LLISFWAVRIALAGFVVPFMAVYDPALMMQGDSMGSTLYMVIKAAFAVALWGCASIGHLR 623
                           +P++ V   A +    S  + +Y+V   +  +   G  ++    
Sbjct: 309 ----------------IPYVEVIKHAFLPALISYIALIYIVHLESMKL---GLQALPRAN 349

Query: 624 APMPWWERLLAFAAGVSLILAAPISDEVGFALGAAV-LGW 662
              PW +RL+ F  G +LI         G +LG    LGW
Sbjct: 350 VAKPWMQRLIGFVFGAALI--------SGLSLGVYYGLGW 381