Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  368 bits (945), Expect = e-106
 Identities = 226/670 (33%), Positives = 358/670 (53%), Gaps = 58/670 (8%)

Query: 19  LFAVALVFSVFQIATAA-------FPLISTQVLRAIHVGFLLLVVYLSY-SFVGHRRPWQ 70
           L+ V L +S+FQ+  A+       F +++    R+IH+ F + + + +Y +  G  R   
Sbjct: 33  LWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLTFAVFLAFTAYPAMKGSPRDRI 92

Query: 71  PLA-WLLGLAGMATAAYQWYFEGDLIQRSGELTTSDLIVGLLLIGLVFEAARRVMGIALP 129
           PL  WLL LAG  +AAY + F  +L  RSG  T  D+I  ++ + L+ EA RR +G  L 
Sbjct: 93  PLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVIASVVGMVLLLEATRRALGPPLM 152

Query: 130 IICALFLAYGLLGQHLPGELAHRGYGLDQIVNQLAFGTEGLYGTPTYVSATYIYLFILFG 189
           ++ ALFL Y   G ++P  +AH+G  L++ ++ L   TEG++G    VS ++++LF+LFG
Sbjct: 153 MVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTEGVFGVALGVSTSFVFLFVLFG 212

Query: 190 AFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVANVVTTGQFTIPLM 249
           A LE+AG    F   A  + GH  GGPAK +V +S L G ++GS +ANVVTTG FTIPLM
Sbjct: 213 AMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSGLVSGSSIANVVTTGTFTIPLM 272

Query: 250 KRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVPYAEVAKAALIPALLYFGS 309
           KR G+    AG VE  +S   QL PP+MGA AF+M E + + Y EV KAA++PAL+ + +
Sbjct: 273 KRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYVGISYVEVIKAAILPALISYIA 332

Query: 310 VYWMVHLEARRSHLHGLPREQCPSAWDALRQRWFLLVPLMVLVALLFSG----------- 358
           + ++VHLEA ++ + GLPR    +    L      ++ L V+ A+++ G           
Sbjct: 333 LIYIVHLEACKAGMSGLPRRHQSTVAQKLLSFTATILGLCVISAVVYYGIGWTKEAFGDA 392

Query: 359 RTPLYSGMVGLALTAIVILGSAI----------------ILRAQKTWLRAAFWVALGILC 402
            TP+ + ++  A   +V + +                  +    K+ L     + + + C
Sbjct: 393 ATPILTVVLLAAYVGLVKISAPYAKEGLGIDENLQYVPDVAPTLKSGLHYLLPIVVLVWC 452

Query: 403 SGFFRMGIG---------VILMVIAGLAIACCFVQGG------RATLHACVMALAEGARH 447
               R   G         +I +++    +   F + G      +  +   + +L  GAR+
Sbjct: 453 LTVERFSPGLSAFWASVFMIFILLTQRPLMALFNRTGSLGDAAKEGVTDLLESLVSGARN 512

Query: 448 AVPVGIACALVGVIIGVISLTGLATTFAGYILDLGRDNLFLSLVLTMLTCLVLGMGIPTI 507
            + +G+A A  G ++GV++LTG+      ++  +   NL L L+ T +  L+LGMG+PT 
Sbjct: 513 MIGIGVATAAAGTVVGVVTLTGIGLVMTDFVEFISGGNLMLMLIFTAVISLILGMGLPTT 572

Query: 508 PNYIITSSIAAPALLELG------VPLIVSHMFVFYFGILADLTPPVALACFAAAPIAKE 561
            NYI+ S++ AP ++ LG      +PLI  H+FVFYFGILAD TPPV LA FAAA IAK 
Sbjct: 573 ANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHLFVFYFGILADDTPPVGLAAFAAAAIAKS 632

Query: 562 KGLLISFWAVRIALAGFVVPFMAVYDPALMMQG-DSMGSTLYMVIKAAFAVALWGCASIG 620
             +          +   ++PFM V++  L++ G DS    +  ++ +  A+ L+  A+ G
Sbjct: 633 DPIRTGIQGFAYDIRTAILPFMFVFNTQLLLMGIDSWWHLMLTILSSITAMLLFSAATQG 692

Query: 621 HLRAPMPWWE 630
                  WWE
Sbjct: 693 WWLTKTKWWE 702