Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 467 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) from Phaeobacter inhibens DSM 17395

 Score = 71.6 bits (174), Expect = 8e-17
 Identities = 104/484 (21%), Positives = 189/484 (39%), Gaps = 44/484 (9%)

Query: 106 LIVGLLLIGLVFEAARRVMGIALPIICALFLAYGLLGQHLPGELAHRGYGLDQIVNQLAF 165
           +++GLLLIG+        + +AL +   LFL            L +    L  +   L  
Sbjct: 9   MVIGLLLIGVP-------IAVALGLSSTLFL------------LIYSDSSLASVAGTLFE 49

Query: 166 GTEGLYGTPTYVSATYIYLFILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSA 225
             EG      + +   I  FIL  +F+   G+ R    F++   GH  GG A   VF+  
Sbjct: 50  AFEG------HFTLLAIPFFILASSFMTTGGVARRIIRFSIACVGHLPGGLAIAGVFACM 103

Query: 226 LMGTITGSGVANVVTTGQFTIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMA 285
           L   ++GS  A VV  G   I  M++ GY   FA GV   +     L+PP    V  + A
Sbjct: 104 LFAALSGSSPATVVAIGSIVIAGMRQVGYSKEFAAGVICNAGTLGILIPP--SIVMVVYA 161

Query: 286 ETINVPYAEVAKAALIPALLYFGSVYWMVHLEARRSHLHGLPREQCPSAWDALRQRWFLL 345
             + V    +  A +IP L+    +   +++ A+   +  LP+ +    W  +       
Sbjct: 162 AAVEVSVGRMFLAGVIPGLMAGLMLMVTIYVMAK---VKNLPKGEW-LGWGEVAASAANA 217

Query: 346 VPLMVLVALLFSGRTPLYSGMVGLALTAIVILGSAIILRAQKTWLRAAFWVALGILCSGF 405
              ++L+ ++  G   +Y G+            +A +      ++    +  +G L S  
Sbjct: 218 SVGLLLIGIILGG---IYGGI-------FTPTEAAAVASVYAFFVATFVYRDMGPLKSAP 267

Query: 406 FRMGIGVILMVIAGLAIACCFVQGGRATLHACVM-ALAEGARHAVPVGIACALVGVIIGV 464
               +G  L ++  + +    V    +  HA    AL E  +  V +    A   ++  V
Sbjct: 268 KPKDMGQFLTMLPKM-LGQTVVYFIPSFFHADTRHALFEAGKLTVTLLFVIANALILKHV 326

Query: 465 ISLTGLATTFAGYILDLGRDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLEL 524
           ++   +    A  +L  G   +   +V+ ++  L+ G  +      +I + +  P  +EL
Sbjct: 327 LTDEQVPQQIATAMLSAGFGPVMFLIVVNVI-LLIGGQFMEPSGLLVIVAPLVFPIAIEL 385

Query: 525 GVPLIVSHMFVFYFGILADLTPPVALACFAAAPIAKEKGLLISFWAVRIALAGFVVPFMA 584
           G+  I   + +     +  +TPPV L  F  + +A    + +   A+      FV   M 
Sbjct: 386 GIDPIHLGIIMVVNMEIGMITPPVGLNLFVTSGVAGMPMMAVVRAALPFLAVLFVFLIMI 445

Query: 585 VYDP 588
            Y P
Sbjct: 446 TYIP 449