Pairwise Alignments

Query, 316 a.a., periplasmic binding subunit of unknown solute from Pseudomonas putida KT2440

Subject, 335 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  141 bits (356), Expect = 2e-38
 Identities = 101/317 (31%), Positives = 152/317 (47%), Gaps = 15/317 (4%)

Query: 7   LALASTLFAVSAAAQAAPTFINIL-TGGTSGVYYPVGVGISQIYSHGIEGS---KTTVQA 62
           L  A T F +   A AA     IL T  T G YYPVGV ++ +    +  S     +  +
Sbjct: 10  LLAAITSFGLIGGAYAAEERSYILATASTGGTYYPVGVALATLTKVKLTPSYHFSLSAIS 69

Query: 63  TKASVENLNLLQAGRGELAFALGDSVADAWKGDAEAGFKTPLKKLRAIAGTYPNYIQIVA 122
           +  S EN+ L+     + A   G   A AW G  E  +     +LR+++  + N    + 
Sbjct: 70  SAGSGENVKLMNDNEAQFAILQGLYGAWAWAG--EGPYAERQNQLRSVSMLWQNVEHFIV 127

Query: 123 SKESG----ITSLSDLKGKRISVGAPKSGTELNARAIFKAAGLTYQDMGKVEYLPYAESV 178
             +      I  L+ +KGK+ S+G+  SGTE + R I K  G+   D   + YL Y  S 
Sbjct: 128 RSDLAPTGTIADLASMKGKKFSIGSKNSGTEFSGRQIMKGVGVD-PDTFNLAYLGYGGSA 186

Query: 179 ELIKNRQLDATLQSSGLGQAAIRDLAATL--PVVFVPIPAEVVTRI-GN-NAYQPATIPA 234
             ++N  +D     +G+   A+    A +   +  +    E + +  GN N +    IPA
Sbjct: 187 SALQNGTIDGMNTPAGVPVGAVTQAFAAMGNDIKILSFTDEQIKQANGNYNLWTKFDIPA 246

Query: 235 NTYDGQSADVSTAAINNILVTRADIGDDLAYQMTKLIFENLPRLVTAHAAAKDIQAENAA 294
           NTY G    ++T A  N L  R DI ++  YQ+TK ++ENL  L   H A KD+  E A 
Sbjct: 247 NTYPGVDKTITTIAQPNFLAVRTDISEEDVYQLTKAMYENLAFLQGIHKATKDMAIEKAI 306

Query: 295 KNLPIPLHPGAARYFKE 311
           + LP+PLH GAARY++E
Sbjct: 307 EGLPMPLHAGAARYYQE 323