Pairwise Alignments

Query, 316 a.a., periplasmic binding subunit of unknown solute from Pseudomonas putida KT2440

Subject, 330 a.a., TRAP transporter solute receptor, TAXI family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 69/291 (23%), Positives = 128/291 (43%), Gaps = 28/291 (9%)

Query: 39  YPVGVGISQIYSHGIEGSKTTVQATKASVENLNLLQAGRGELAFALGDSVADAWKGDAEA 98
           + V   I+++ +  ++G +  V AT  +  ++  + A  G + F  G    + W      
Sbjct: 35  FVVNTTIARVVNTHVDGIELQVSATGTATRHM--MDAATGRVDFLFGAPTIN-WMMVNRL 91

Query: 99  GFKTPLKKLRAIAGTYPNYIQIVASKE----------SGITSLSDLKGKRISVGAPK-SG 147
           G   P +          N   I A +           SGI SL+DL+ + +  G P  + 
Sbjct: 92  G---PFQHFETAPALEQNVGMIFAYQMGPYHYITRAGSGIESLADLRSRTVFAGPPGGAA 148

Query: 148 TELNARAIFKAAGLTYQDMGKVEYLPYAESVELIKNRQLDATLQSSGLGQAAIRDLAATL 207
           TE+  R I ++ G+T  +M K++   +  +++  ++ ++D  +  + L  AA++  A T 
Sbjct: 149 TEVVLRVIEQSTGITPGEM-KLQAFGFDAAIQAFQDGKIDVIVLPTNLPSAAVQQFALTS 207

Query: 208 PVVFVPIPAEVVTRIGNNAYQPATIPANTYD-GQSADVSTAAINNILVTRAD--IGDDLA 264
            +  + +    VT           IP + Y   Q  D +T    +I+   A   + + + 
Sbjct: 208 RIRLLDVDLRNVTIRAETGGTANEIPPDAYGPNQVNDTATRTHGSIVNFSAGMHVPEHVV 267

Query: 265 YQMTKLIFENLPRLVTAHAAAK----DIQAENAAKNLPIPLHPGAARYFKE 311
           Y++T+ I+ENL  +   H+AA      I  E A   +   LHPGA RY++E
Sbjct: 268 YEVTRAIWENLGDI---HSAADWMPGTITPEMALSLVSGRLHPGAERYYRE 315