Pairwise Alignments

Query, 609 a.a., putative transporter from Pseudomonas putida KT2440

Subject, 446 a.a., SLC13 family permease from Methanococcus maripaludis JJ

 Score =  135 bits (340), Expect = 4e-36
 Identities = 69/184 (37%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 11  LLAIVIILFVINRPRMDVVALLVILAL--PLLGILTVEQALAGFSDPNVVLIAALFVIGE 68
           +L    +LF      + V A+LV +AL  P + IL+  +A A F +  VVL  A F++GE
Sbjct: 42  ILGTAAVLFFTEALPLPVTAMLVPVALSFPGIDILSSSRAFADFGNKWVVLFMAAFILGE 101

Query: 69  GLVRTGIAYRIGEWMSERAGNSEARLLVLLMVAVAGLGSIMSSTGVVAIFIPVVLSIAAR 128
            + RTG A +IG+   + AG S+ +L++L+M+A+  + + +S+TG  A FIP+V+ I   
Sbjct: 102 AVFRTGFADKIGQLTVKAAGKSQLKLMLLVMLAIGTMSAFLSNTGTTAAFIPIVMGICVS 161

Query: 129 LQLSPSRLMMPLAFAGLISGMLSLVATPPNVVVHSELVRHGEAGFSFFSFTPFGLVVLVL 188
             L P +L++P+A+A  + G L+L+ TPPN +V+  L + G A F FF F   G+++ ++
Sbjct: 162 ASLKPGKLLIPMAYAASLGGTLTLIGTPPNGLVNDALEKSGIAPFGFFEFAKIGILIFIV 221

Query: 189 GIGY 192
           GI Y
Sbjct: 222 GILY 225



 Score =  128 bits (322), Expect = 4e-34
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 9/219 (4%)

Query: 386 KAVRQLQSKPKDFLVLSLPAEIDLVAPARTRAPQALLSLAVMVGLMVSGAVPNVIAALIG 445
           K + + ++K KDF+        D +     +   A L    +V +  +G +P V A ++G
Sbjct: 232 KLLPESKAKAKDFVS-------DTLKYRTNKMWIATLVFTFVVLMTATGTIPLVTAFMLG 284

Query: 446 CLLMGAGRCIDMNSAYRAIHWQSLVLIVGMLPFAQALQKTGGIDLAVGGLVNVLGGAGPS 505
             ++    CI M  A+ +I W ++ L  GMLP   A+  TG   +    ++  +    P 
Sbjct: 285 ACMVVMTGCITMQEAFNSISWTTIFLFAGMLPLGSAMAATGAATMIANTVITYVHS--PL 342

Query: 506 AILACLFAVTAVIGLFISNTATAVLMAPVAVSTAAQLGMSPYPFAMTVALAASAAFMTPV 565
           A+LA  + +TA+I   +SNTATA L+ P+ ++ A    +S  P  M +A+AAS+ F+TP+
Sbjct: 343 ALLAAAYVLTALITEVMSNTATAALVMPLGIALADAFDVSAKPILMAIAVAASSCFLTPI 402

Query: 566 SSPVNTLVLGPGQYRFADFVKIGVPFTVLVMLVTVVMVP 604
           ++P N ++LGPG Y F D+ K G P  +L  +V + ++P
Sbjct: 403 ATPPNMIILGPGGYSFKDYAKSGWPLEILCAVVAIAVIP 441



 Score = 61.6 bits (148), Expect = 7e-14
 Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 11/197 (5%)

Query: 6   LWVLGLLAIVIILFVINRPRMDVVALLVILALPLL-GILTVEQALAGFSDPNVVLIAALF 64
           +W+  L+   ++L         V A ++   + ++ G +T+++A    S   + L A + 
Sbjct: 256 MWIATLVFTFVVLMTATGTIPLVTAFMLGACMVVMTGCITMQEAFNSISWTTIFLFAGML 315

Query: 65  VIGEGLVRTGIAYRIGEWMSERAGNSEARLLVLLMVAVAGLGSIMSSTGVVAIFIPVVLS 124
            +G  +  TG A  I   +     +S   LL    V  A +  +MS+T   A+ +P+ ++
Sbjct: 316 PLGSAMAATGAATMIANTVITYV-HSPLALLAAAYVLTALITEVMSNTATAALVMPLGIA 374

Query: 125 IAARLQLSPSRLMMPLAFAGLISGMLSLVATPPNVVVHSELVRHGEAGFSFFSFTPFG-- 182
           +A    +S   ++M +A A   S  L+ +ATPPN+++       G  G+SF  +   G  
Sbjct: 375 LADAFDVSAKPILMAIAVAAS-SCFLTPIATPPNMII------LGPGGYSFKDYAKSGWP 427

Query: 183 LVVLVLGIGYMLLTRHW 199
           L +L   +   ++ R W
Sbjct: 428 LEILCAVVAIAVIPRIW 444



 Score = 45.4 bits (106), Expect = 5e-09
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 18/190 (9%)

Query: 421 LLSLAVMVGLMVSGAVP-NVIAALIGCLLMGAGRCIDMNSAYRAI-----HWQSLVLIVG 474
           L+ L     L  + A+P  V A L+   L   G  ID+ S+ RA       W  +VL + 
Sbjct: 40  LIILGTAAVLFFTEALPLPVTAMLVPVALSFPG--IDILSSSRAFADFGNKW--VVLFMA 95

Query: 475 MLPFAQALQKTGGIDLAVGGLVNVLGGAGPSAILACLFAVTAVIGLFISNTATAVLMAPV 534
                +A+ +TG  D  +G L     G     ++  +      +  F+SNT T     P+
Sbjct: 96  AFILGEAVFRTGFAD-KIGQLTVKAAGKSQLKLMLLVMLAIGTMSAFLSNTGTTAAFIPI 154

Query: 535 AVSTAAQLGMSPYPFAMTVALAAS-AAFMTPVSSPVNTLV------LGPGQYRFADFVKI 587
            +       + P    + +A AAS    +T + +P N LV       G   + F +F KI
Sbjct: 155 VMGICVSASLKPGKLLIPMAYAASLGGTLTLIGTPPNGLVNDALEKSGIAPFGFFEFAKI 214

Query: 588 GVPFTVLVML 597
           G+   ++ +L
Sbjct: 215 GILIFIVGIL 224