Pairwise Alignments

Query, 432 a.a., putative Phage integrase from Pseudomonas putida KT2440

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (284), Expect = 7e-30
 Identities = 95/288 (32%), Positives = 142/288 (49%), Gaps = 18/288 (6%)

Query: 128 HVRPCLGDLPIKYITA-ELIDKHLIWPGQAKLSLSYLRQMFGMLLTAFRQALKLGMIDSN 186
           H+ P + D P+K ITA E+I+  L+ P +AK SL  ++++   L      A   G+I +N
Sbjct: 137 HIFPHISDKPVKAITAPEIIE--LLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQAN 194

Query: 187 PMAGVRFNDFTKAKILPKAARLRSVQLPELMQQLAQAFEAAPNDAMLALMMLAHGTRIGE 246
           P+ G++   F K K    AA L   +LPELM  +A A        +L    L   TR  E
Sbjct: 195 PLTGIKAA-FKKPKKENMAA-LTPAELPELMSAIANASIKRTTRCLLE-WQLHTMTRPAE 251

Query: 247 TRMARWSEVSLAASEWFIPAAHTKTRTEHRLPLTAQLKALLTRYRGIQQARGYEGVYLFP 306
              ARW E++     W IPA   K R EHR+PLT Q+ ALL   + I   R     ++FP
Sbjct: 252 ASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRD----FIFP 307

Query: 307 NRRG---HCLSETQASMVFTRLG-QGEWTSHDLRKVSRSTWTDLGIDGHIGEMLLNHT-L 361
           + R     C S+T A+M   R+G  G   SH LR ++ +T  + G D  + E  L H   
Sbjct: 308 SDRAPKKPCNSQT-ANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD 366

Query: 362 GKIASTYIHTQAMEQRKLALEKWHAWLDRI--GFAAIHGLKEALFEIP 407
            ++ S Y  T  +E+RK  +  W   ++    G  ++ G K+   ++P
Sbjct: 367 NQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKNKLP 414