Pairwise Alignments

Query, 432 a.a., putative Phage integrase from Pseudomonas putida KT2440

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 86/292 (29%), Positives = 141/292 (48%), Gaps = 22/292 (7%)

Query: 103 YVDRMSHDRSLSAKRKAATRA--AIGQHVRPCLGDLPIKYITAELIDKHLIWPGQAKLSL 160
           Y DR    +  S K + A +A  A+ +H+ P LG++PI+ I    +   ++ P +A+ +L
Sbjct: 110 YSDRWLTLKRESVKPETADKAYRALEKHILPKLGNVPIQDIKPRTV-LSILEPVKAQGTL 168

Query: 161 SYLRQMFGMLLTAFRQALKLGMIDSNPMAGVRFNDFTKAKILPKAARLRSVQ---LPELM 217
             ++++  ++    R A+  G I+ N +A     D TK    PK   + +++   LPELM
Sbjct: 169 ETVKRLCRIINEVMRLAVASGDIEVNYLA-----DITKLFPAPKRQHMVTIEPERLPELM 223

Query: 218 QQLAQAFEAAPNDAMLALMMLAHGTRIGETRMARWSEVSLAASEWFIPAAHTKTRTEHRL 277
           Q +A A        +L    L   TR  E+  ARW ++      W IPA   K +  H +
Sbjct: 224 QAIANANITLATRCLLE-WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTI 282

Query: 278 PLTAQLKALLTRYRGIQQARGYEGVYLFP---NRRGHCLSETQASMVFTRLG-QGEWTSH 333
           PLT Q  ALL   + I   R     Y+FP   N + H  S++ A+M   R+G +G+  SH
Sbjct: 283 PLTEQTLALLEIMKPISSHR----EYIFPSNKNPKSHVNSQS-ANMALKRMGYKGQLVSH 337

Query: 334 DLRKVSRSTWTDLGIDGHIGEMLLNHT-LGKIASTYIHTQAMEQRKLALEKW 384
            LR ++ +T  + G +  I E  L H    ++   Y   + +EQR+  +  W
Sbjct: 338 GLRALASTTLNEQGFNPDIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWW 389