Pairwise Alignments

Query, 155 a.a., putative Phage terminase, small subunit from Pseudomonas putida KT2440

Subject, 170 a.a., hypothetical phage terminase, small subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  186 bits (472), Expect = 2e-52
 Identities = 99/167 (59%), Positives = 115/167 (68%), Gaps = 14/167 (8%)

Query: 3   GRRPTPTELKLVRGNPGKRPINKNEPQPAKRIPSAPDHLSSDGQVAWGRLTVLLDRMGVL 62
           GR+ TPT LKLV GNPGKRP+NK EP+    IP  P +LS   + AW +LT LL  MGVL
Sbjct: 4   GRKTTPTALKLVTGNPGKRPLNKKEPKLEAGIPRMPAYLSPRAKAAWKKLTKLLKDMGVL 63

Query: 63  TEADGFALERLCDCYSEILALRDVIGEQGRTYETTSTQGE--------------LVLKAN 108
           T ADG ALERLCD YSEIL LRD I + GRTY++    GE              +++KAN
Sbjct: 64  TLADGMALERLCDVYSEILDLRDEIKQNGRTYQSIKIIGENIDEETKEFTQVEQMLMKAN 123

Query: 109 PAVAMLADVDRRFKSYLVEFGLTPAARSKVQVKDDEPKEDQFAEFFG 155
           PAV MLAD DRRFK+YLVEFGLTP+ARSKVQV D + K+D   EFFG
Sbjct: 124 PAVQMLADADRRFKAYLVEFGLTPSARSKVQVTDGDKKKDDIDEFFG 170