Pairwise Alignments

Query, 602 a.a., putative Phage terminase, large subunit from Pseudomonas putida KT2440

Subject, 581 a.a., hypothetical phage terminase large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  618 bits (1594), Expect = 0.0
 Identities = 321/582 (55%), Positives = 403/582 (69%), Gaps = 28/582 (4%)

Query: 2   SQKKTSSRSSSVD--DPATQYAKEVHSGERVAGPDIRNACARHLRDLEEGPKRGLTWDLD 59
           ++KKT+S SSS D  D  T++AK+V SGE +AGPDIRNAC RHL+DLE G +RGLTWDL 
Sbjct: 3   TRKKTTSTSSSADIEDRVTRWAKQVASGEFLAGPDIRNACKRHLKDLETGHERGLTWDLA 62

Query: 60  AANKAIRFYRTVLKLNGGEFEGLPFELLPWQKFIVGSIFGWKSSDGYRRFRVVYVESGKG 119
           AAN+AI F+  VL+L+GG+ EG PF LL WQ FIVGS+FGWK +DG RRFR+ YVESGKG
Sbjct: 63  AANRAISFFPKVLRLSGGDHEGKPFNLLDWQAFIVGSLFGWKDADGTRRFRMCYVESGKG 122

Query: 120 SGKSPLAAGVGLTGLIADNEARAEIYAAATKKDQAMILFRDAVAMVQQSPELTKRLVCSG 179
           SGKSPLAAG+GL GL+AD EA AEIYAAATKKDQAM+LFRDAV+MV QSP+L+ RL  SG
Sbjct: 123 SGKSPLAAGIGLYGLVADGEASAEIYAAATKKDQAMVLFRDAVSMVNQSPQLSSRLKKSG 182

Query: 180 TGQNIWNLAYLKSGSFFRPISSDDGQSGPRPHMALIDEVHEHKTNMVVEMMRAGTKSRKQ 239
           TGQ++WNLAYL   SFFRPISSD+GQSGPRPHMALIDEVHEHK N VVEMMRAGTK RKQ
Sbjct: 183 TGQSVWNLAYLAKNSFFRPISSDNGQSGPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQ 242

Query: 240 ALIFMITNSGSNKRGPCWEYHEYGSRVASGALTDDGFFAYICSLDEGDDPIQDESCWFKS 299
           ALIFMITNSG ++   C+ YHEYG  + +G   DD FFA+ICSLDEGDDPI DESCW K+
Sbjct: 243 ALIFMITNSGHDRTSVCYSYHEYGKAICAGTKEDDSFFAFICSLDEGDDPINDESCWQKA 302

Query: 300 NPSLQDADLPGMKYLREQVTEARGMPSKEAMVRRLNFCEWTGAESPWISWDVWSQAEERV 359
           NPSL        KYLREQVT+A+GMP+KE++VRRLNFC+W  + SPW+S D W   E+  
Sbjct: 303 NPSLGHTFT--HKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWMDCEDDF 360

Query: 360 PMSLLRNRPSVGGLDLSSTTDLTSFVLLFYPTYEDPHWRLLPYFWIPDHELDKREARDKV 419
            +S L      GGLDLS T DLT+ + L++P  +     LL   W P   L  RE  D V
Sbjct: 361 DISELYGEECYGGLDLSGTRDLTA-LALYFPRVK----TLLVDLWTPKDTLLDRERTDNV 415

Query: 420 PYAAWIKSRDLETTPGRAISKLHVLRRLQTICDFFQVDKIAFDRWRIEDMRQLMSEYDIT 479
           PY+AW++   +   PG A+    V  R+  +   F++  I FD++RI  +   ++E ++ 
Sbjct: 416 PYSAWLRQGFIHAPPGHAVDYSFVAERIAELSALFEIKSIGFDQYRIHYLEPELAEANVF 475

Query: 480 LPELVEFGQGFKDMGPAVDEFERRLLGMIEQQPEEEGGAAEFFDDALPAEAVESLRHDGN 539
           +P LV+ GQG+     +     R +               E F+  + +   + +R   N
Sbjct: 476 IP-LVKHGQGYYKASESNLWMPRSI---------------ELFEKLITS---KEIRIKTN 516

Query: 540 PVMTWCAGNAVIVSDPANNRKADKAKATGRIDGIIAAIMATG 581
           P + W A +AV+ +D  +NR   K K+TGRIDG++AA MA G
Sbjct: 517 PCLRWNAASAVLEADAKDNRIFTKKKSTGRIDGVVAAAMAVG 558