Pairwise Alignments

Query, 473 a.a., Group II intron-encoding maturase from Pseudomonas putida KT2440

Subject, 323 a.a., RNA-directed DNA polymerase from Vibrio cholerae E7946 ATCC 55056

 Score = 50.8 bits (120), Expect = 6e-11
 Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 20/208 (9%)

Query: 113 AVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPIFDPLFSDYSYGFRPGRSTHQAI 172
           A +   IPK + G R +  PS   ++ Q+ L   L P+      D SY +  GRS     
Sbjct: 40  AYKVYSIPKRKAGRRTIAHPSSKLKICQRHLNAILNPLLK--VHDSSYAYVKGRSIKD-- 95

Query: 173 EMARAHVTAGHRWCVEIDLEKFFDRVNHDILMACIERRVKDKCVLRLIRRYLEAGIMSGG 232
               A V +   + +++D + FF+ +   IL  C+ +      +L  +    +   +   
Sbjct: 96  ---NALVHSHSAYVLKMDFQNFFNSITPTILRQCLIQ----NDILLSVNELEKLEQLIFW 148

Query: 233 VVSPRQEG---TPQGGPLSPLLSNILLDELDRELE----RRGHRFVRYADDANIYVRSPR 285
             S ++ G      G P+SPL+SN ++   D+ +     + G  + RYADD         
Sbjct: 149 NPSKKRNGKLILSVGSPISPLISNAIMYPFDKIINDICTKHGINYTRYADDITFSTNIKN 208

Query: 286 AGERVLVSVERFLRERL--KLTVNRKKS 311
              ++   VE+ + +    ++ +N++K+
Sbjct: 209 TLNKLPEIVEQLIIQTYAGRIIINKRKT 236