Pairwise Alignments

Query, 369 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Klebsiella michiganensis M5al

 Score =  174 bits (442), Expect = 2e-48
 Identities = 101/320 (31%), Positives = 175/320 (54%), Gaps = 21/320 (6%)

Query: 18  GVVCAEAGDAQKPSVHIYNWYDYIAPNTVKDFQKEAGVSVVYDVFDNSEVMQSKLMAGRS 77
           G+  A A D++  +++ YNW +Y+ P  ++ F KE G+ V+Y  ++++E M +KL   + 
Sbjct: 17  GMSAAHADDSK--TLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKD 74

Query: 78  G-YDVVVASADLLPNLIKAGVLKRLDRSKLPNWSHLDPDVLAKLQSNDPGNSYAAPYLWG 136
           G YD+VV S   +  + K G+L+++D+SKL N+ +LDP++L K    DP N Y+ PY+WG
Sbjct: 75  GAYDLVVPSTYFVDKMRKEGMLQKIDKSKLSNFGNLDPEMLNK--PFDPNNDYSIPYIWG 132

Query: 137 TTGIGYDADKVKSLLGPDAPVNSWDLIFKEENLAKLRQCGVAMLDAPGEVIPIALHYLGL 196
            T IG ++D++         V SW  ++K E  + L      + D   EV  +AL  LG 
Sbjct: 133 ATAIGINSDEI-----DPKTVTSWADLWKPEYKSSL-----LLTDDAREVFQVALRKLGY 182

Query: 197 PYNSHNPDDYKKAQELLLKLRPHIAYFDSSRFISDLANGNVCVVLGWAGGVSDAQKASEL 256
             N+ +P + + A   L KL P++A F+S    +    G V + + W G    A++    
Sbjct: 183 SGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAWVARQ---- 238

Query: 257 AGNHRNLVYSIPREGAPVWVESMVQLNDAPNPEQGLAFINYMLRPEVIAESSNYLSYPNA 316
           AG    +V+  P+EG   W++S+    +A N +  L  IN++LRPE+  + +  + YP  
Sbjct: 239 AGTPLEVVW--PKEGGIFWMDSLSIPANAKNVDGALKLINFLLRPEIAKQVAETIGYPTP 296

Query: 317 NKDATALVEKKIRDNPGVYP 336
           N  A  ++  ++ ++  +YP
Sbjct: 297 NLAARKMLSPEVANDKSLYP 316