Pairwise Alignments

Query, 386 a.a., Sensory box histidine kinase from Pseudomonas putida KT2440

Subject, 997 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  193 bits (490), Expect = 2e-53
 Identities = 132/359 (36%), Positives = 184/359 (51%), Gaps = 18/359 (5%)

Query: 31  MLDPSGHVVSWNAGAQRIKGYRRDEVIGKHFSLFFTPQDCAD-GRPERLLCQALEQGVAQ 89
           ML P G ++  NA A    G R  ++ G  F  + +P   A  G PE +  +A+ Q VA 
Sbjct: 514 MLAPDGSILYVNATALAGIGARFHQLAGTPF--WASPWFAATPGMPETI--KAMTQHVAA 569

Query: 90  DEGWRVRKDGTQFWALAALDV----IRDESGQIIGLAKVTRDITDRRETAQQLDAVRAQL 145
            +   V         +   D     +  E G ++ L     DI++R  T Q L       
Sbjct: 570 GDTEHVTISLNMPGGIRIFDFSMRPVLGEDGNVVALVPEALDISERVATEQTLQ------ 623

Query: 146 FQAQKLEALGQLTGGLAHDFNNMLTIIISSARLALATQDP-ARTQRMLQHILDASQRGTE 204
            Q  K+EALG LTGG+AHDFNN+L  ++ S  L      P     R++ +    ++RG  
Sbjct: 624 -QLHKMEALGNLTGGIAHDFNNLLMAVLGSLELLRRRMPPDPALLRLVDNARAGAERGAS 682

Query: 205 LTQQLLSFARHRKFDVASVAPAELVNATRGLLEHALPSSIDLKVLLQPDLPLIEVDAGQL 264
           LT ++LSFAR ++    ++    L+   R LL  +L  +I L+V L P L  ++ D  QL
Sbjct: 683 LTARMLSFARKQELHKTAIDLPVLIEDMRALLLSSLGPTIQLEVELPPQLARVKTDPNQL 742

Query: 265 QMVLLNLLFNARDAIDGHGRISLTVDVVELFGEVEGLK-GSFVRFEVEDSGEGIPTEILP 323
           +  LLNL  NARDA+ G GRI +T +   L  E  GL  G +V   + DSG G+    L 
Sbjct: 743 ETALLNLAANARDAMAGEGRILITAEECALTSEQNGLPIGRYVCLALSDSGTGMDEVTLK 802

Query: 324 RIFEPFFTTKPFGKGTGLGLSQVYGFARQSGGAICVDSEPGRGTCMRLYLPMYQNQTDS 382
           R  EPFFTTK  GKGTGLGLS V+G A QSGG + + S PG GT   ++LP   N  ++
Sbjct: 803 RAVEPFFTTKGVGKGTGLGLSMVHGLAEQSGGRLMLQSSPGLGTTAEIWLPALDNDEET 861