Pairwise Alignments

Query, 481 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 519 a.a., circadian clock protein KaiC from Synechococcus elongatus PCC 7942

 Score =  151 bits (382), Expect = 5e-41
 Identities = 125/489 (25%), Positives = 226/489 (46%), Gaps = 24/489 (4%)

Query: 3   QALKRLVTGIDGLDALLKGGLIAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLVATL 62
           QA+ ++ T I+G D +  GGL  G S ++ G  G GKT+ + Q     +       V   
Sbjct: 16  QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75

Query: 63  LSESHERLFQYLSTLDFFDPALVGDKIQFV--SAFDTLEQD-----GLDAVVRLLRQEIA 115
             E+ + + +   +  +    LV +   F+  ++ D   Q+      L A++  +   I 
Sbjct: 76  FEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQ 135

Query: 116 RQQASLLIVDGVLNARVRAETALDTKKFVSELQGHAAFAGCTVLLLTSARLDEGSP---- 171
           + +A  + +D V +   + + +   ++ +  L       G T ++ T+ R++E  P    
Sbjct: 136 KYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM-TTERIEEYGPIARY 194

Query: 172 --EHTMVDGVIELGEQLVGSRAVRHVQLRKTRGSGALSGRHECLIDESGMQVYPRLEALF 229
             E  + D V+ L   L G R  R +++ K RG+  + G +   I + G+ ++P      
Sbjct: 195 GVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRL 254

Query: 230 SHPSQLGSGTLARISSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGLAFL-GASTPQ 288
           +  S     +  R+SSGV   DEM GGG    S+ L  G +G GKT L   F+  A   +
Sbjct: 255 TQRS-----SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANK 309

Query: 289 APGLHFGFYETPERLRSKAASLGYDFAAMEKGGSLQL-CWQPTTEGLLDQVGARLLERVA 347
              + F + E+  +L   A S G DF  ME+   L++ C  P + GL D +   +   + 
Sbjct: 310 ERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQI-IKSEIN 368

Query: 348 AQGSKRVVIDSLGAFSRLAIDPTRLNAFFRALAGELRARDVSVMLTWEMRDIFGAEISAP 407
                R+ IDSL A +R  +       F   + G  +  +++ + T       GA  S  
Sbjct: 369 DFKPARIAIDSLSALAR-GVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAH-SIT 426

Query: 408 APDLSSIVDNLMLMRFVELDSQLRRMLSVLKVRDSHHDPALHELLIVPQGITLRKAFEGA 467
              +S+I D ++L+++VE+  ++ R ++V K+R S HD A+ E +I  +G  ++ +F   
Sbjct: 427 DSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNF 486

Query: 468 CGVLSGTPT 476
             ++SG+PT
Sbjct: 487 ERIISGSPT 495