Pairwise Alignments

Query, 397 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 393 a.a., PepSY-associated TM helix (NCBI) from Rhodospirillum rubrum S1H

 Score =  299 bits (766), Expect = 8e-86
 Identities = 161/398 (40%), Positives = 228/398 (57%), Gaps = 14/398 (3%)

Query: 1   MAKSPKKSK-SRLWFLVHSWLALPIWFFVLIVCFTGMLAVVSQEIVWLADPAARANKPDA 59
           M K+P+KS  +RLWFLVHSW+ LP+W +V  +CFTG LA VS EI+WL DP  RA    A
Sbjct: 1   MDKTPRKSSGARLWFLVHSWMGLPLWAYVFFLCFTGTLASVSHEIMWLIDPEVRAG---A 57

Query: 60  DTERMSFQQVLEALNKAEPDMVVERLSQPDGSHF-AVKANVTLPDGTSPTLYVNPYTGTI 118
             +      ++ A   A P      LS   G+ + A    + L +G     YV+P + T+
Sbjct: 58  SGDPAPASALIAAAEAAAPGS--RALSVGWGADYMAATVRLGLENGLYAMAYVDPVSATL 115

Query: 119 QGRTPDFNFEAFTRALHGWWLVPFTNGFSWGWYLVSLLGLPMLASLVTGLVVYKKFWKGF 178
           +G   D     F RALHGW L P+T G+ WGWYLV+++ +P+L S+VTG+VVYK+FW+ F
Sbjct: 116 RGIGSDNPLPVFLRALHGWLLSPWTGGYPWGWYLVAVMAIPLLGSVVTGMVVYKRFWRAF 175

Query: 179 FK--PVRTGHGSRIFWGDLHRLSGVWSIWFIAVISITGTWFLIQAILSDNHITISSRPIV 236
           F    +RTG G+R+  GDLHRL G WS+WF+ +I +TG WFL+QA + D    +     +
Sbjct: 176 FTRPKLRTGKGARVLLGDLHRLGGAWSLWFVLLIGVTGLWFLVQAAIVDLRGALDPGAPL 235

Query: 237 PVIAREEVPQTPDGSPASRIDLDEAARLAGLAIPGLEVTSITLPATAYSHVTLSGPGWYP 296
            VI R ++P+   G      ++D A   A     G  VT++  P TA+  +   G G  P
Sbjct: 236 VVIDRADLPKRAPGEHPPPAEVDAALAAAQATHAGGRVTALYFPGTAFDPIYAYGSGRVP 295

Query: 297 LMFQSASVNPYTRNVDSQFLISDRSALEFVTESMRPLHTGDFG-----GLPIKLVWFFFG 351
           L+     V+P T  V       D   L   ++ +RPLH GDFG     GL IK VWF FG
Sbjct: 296 LLSDVTYVHPRTAEVLYSKKGGDSGPLGLASQILRPLHVGDFGGPGALGLAIKGVWFLFG 355

Query: 352 LILTLMVLSGLLIWTKRTAQATAAALKRSERAPRAAHS 389
           LIL++++ SG+LIW+KRT +AT    + ++     +H+
Sbjct: 356 LILSMLIFSGMLIWSKRTVRATLEMRQGAKLGESPSHA 393