Pairwise Alignments

Query, 397 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 555 a.a., PepSY-associated TM helix (NCBI) from Rhodospirillum rubrum S1H

 Score = 55.5 bits (132), Expect = 4e-12
 Identities = 92/409 (22%), Positives = 157/409 (38%), Gaps = 37/409 (9%)

Query: 11  RLWFLVHSWLALPIWFFVLIVCFTGMLAVVSQEIV-WLADPAARANKPDADTERMSFQQV 69
           R++  VH+W  +     + I  + G + V  + +  W + P      P  D    +   +
Sbjct: 7   RIYKTVHTWTGILTGMALFIAFYAGAITVFKEPLARWASPPMTTPVAPSLDD---ALPLI 63

Query: 70  LEALNKAEPDMVVE-RLSQPDGSHFAVKANVTLP-DGTSP----TLYVNPYTG------- 116
           +  L +A P+   E  L   +  H   +     P +G       TL +  +         
Sbjct: 64  ISTL-RASPEAAREFSLHLREAEHLPGRLEWQSPAEGAESHRHDTLGMEHFVAHPGEDGA 122

Query: 117 -TIQGRTPDFNFEAFTRALHGWWLVPFTNGFSWGWYLVSLLGLPMLASLVTGLVVYKKFW 175
             I+   P      F   LH    +PF +  +  W +  +  L  LA LV+G+V+     
Sbjct: 123 ARIEAVAPS-KLAEFIDVLHRVVGLPFDSDTA-RWIMGVIACLYALA-LVSGVVLLVPTL 179

Query: 176 KGFFKPVRTGHGSRIFWGDLHRLSGVWSIWFIAVISITGTWFLIQAILSDNHITISSRPI 235
                 +R G   +  W D H + G++S+ F  V+++T T F     L     T+     
Sbjct: 180 VKDLFALRPGRNLKRLWRDAHNVVGLFSLPFHLVMALTATVFAFHDDLYSLQDTVIHDGR 239

Query: 236 VPVIAREEVPQTPDGSPASRID--LDEAARLAGLAIPGLEVTSITLPATAYSH----VTL 289
           +  + +   P  P    A      L  A  LA +       T I L  T  +     V +
Sbjct: 240 LASVWQAPSPAPPQPGEARDPGALLPPADLLARVRALSPTFTPIRLHYTQATGPRAMVRV 299

Query: 290 SGPGWYPLMFQSA----SVNPYT-RNVDSQFLISDRSALEFVTESMRPLHTGDFGGLPIK 344
            G     L+ + A    +++PY+ R V++ +L   +S       S   LH   +GGLP+K
Sbjct: 300 WGQDATALVSRPAGGFVAIDPYSGRIVNADYLPGHQSPALTTIGSFFALHFATYGGLPVK 359

Query: 345 LVWFFFGLILTLMVLSGLLIWTKRTAQATAAALKRSERAPRAAHSETTV 393
            ++F  GL    +  SG L+W     ++     +R E  P     +TTV
Sbjct: 360 WMYFLLGLAGAWLFYSGNLLW----IESRRKTQRRGEATPPRQRRDTTV 404