Pairwise Alignments

Query, 397 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 539 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 60.8 bits (146), Expect = 9e-14
 Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 13/248 (5%)

Query: 149 GWYLVSLLGLPMLASLVTGLVVYKKFWKGFFKPVRTGHGSRIFWGDLHRLSGVWSIWFIA 208
           G Y++ +  +    +LV+G++         F  +R   G   FW D H L G+ S+ F  
Sbjct: 152 GVYVLGIAAVLYFLALVSGVIFLLPTLTKSFFALRKDKGESRFWLDAHNLVGITSLPFHL 211

Query: 209 VISITGTWFLIQAILSD--NHITISSRPIVPVIAREEVPQTPDGSPASRIDLDEAARLAG 266
           VI +T   F     L D   H+    +P+    A +  P T    P     L +  ++A 
Sbjct: 212 VICVTVIVFAFHDQLYDGLKHMVYGEKPLFAQSAPDRTPYTLADLPKITTVLAKVQQIA- 270

Query: 267 LAIPGLEVTSITLPATAYSHVTLSGPGWYPLMFQSASV------NPYTRNVDSQFLISDR 320
              P  +V  +T         TL    + P  F    V      +PY+  V +  +    
Sbjct: 271 ---PDYQVNEMTFMNLDNPRATLRLGLYNPNGFMRGPVTDFLYLHPYSLKVSNSTIDQSE 327

Query: 321 SALEFVTESM-RPLHTGDFGGLPIKLVWFFFGLILTLMVLSGLLIWTKRTAQATAAALKR 379
             +   T ++   LH G +GG   + V+FF GL    +  SG L+W ++  +  A+   R
Sbjct: 328 QGIWARTVAVFFGLHFGSYGGDLGRWVYFFLGLSGAFLFYSGNLLWLEKRRKKQASEQTR 387

Query: 380 SERAPRAA 387
           + R   +A
Sbjct: 388 ACRLMASA 395



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 22/138 (15%)

Query: 7   KSKSRLWFLVHSWLALPIWFFVLIVCFTGMLAVVSQEI-------VWLADPAARANKPD- 58
           K +SR W   H+ + +    F L++C T ++     ++       V+   P    + PD 
Sbjct: 189 KGESRFWLDAHNLVGITSLPFHLVICVTVIVFAFHDQLYDGLKHMVYGEKPLFAQSAPDR 248

Query: 59  -----ADTERMSFQQVLEALNKAEPDMVVERLS--QPDGSHFAVKANVTLPDG-----TS 106
                AD  +++   VL  + +  PD  V  ++    D     ++  +  P+G      +
Sbjct: 249 TPYTLADLPKIT--TVLAKVQQIAPDYQVNEMTFMNLDNPRATLRLGLYNPNGFMRGPVT 306

Query: 107 PTLYVNPYTGTIQGRTPD 124
             LY++PY+  +   T D
Sbjct: 307 DFLYLHPYSLKVSNSTID 324