Pairwise Alignments

Query, 308 a.a., periplasmic murein D-alanyl-D-alanine endopeptidase from Pseudomonas putida KT2440

Subject, 316 a.a., D-alanyl-D-alanine endopeptidase from Vibrio cholerae E7946 ATCC 55056

 Score =  327 bits (839), Expect = 2e-94
 Identities = 171/298 (57%), Positives = 218/298 (73%), Gaps = 2/298 (0%)

Query: 5   LSILSLLLLLTGTATLPSTAAAQPPAQVQRDPSKLHLASGSALLIDLNSNQELYSSHADR 64
           L I S L++     +  S+   +  A V++   K  L++ SAL+IDL +N+ +YS++ D 
Sbjct: 11  LLICSSLIIAIPAHSADSSTTTK--AGVKKTVKKQELSANSALVIDLKTNEIIYSNNPDA 68

Query: 65  VVPIASVTKLMTAMVVLDAKLPMDEMLTMTIANNPEMKGVYSRVRLGSQLDRRETLLITL 124
           V PIASVTKLMTA+V LDAKLPMD  L +TI +  EMKGV+SRV++GS++ R++ LL+TL
Sbjct: 69  VKPIASVTKLMTAIVTLDAKLPMDAKLPITIKDAKEMKGVHSRVKIGSEISRKDMLLLTL 128

Query: 125 MSSENRAANSLANAYPGGYPAFIKAMNAKARSLGMAHTRYVEPTGLSTQNVSTARDLAKL 184
           MSSENRAA SLA+ YPGGY AFIKAMNAKA++LGM +TR+VEPTGLS +NVSTARDL  L
Sbjct: 129 MSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRFVEPTGLSAKNVSTARDLVVL 188

Query: 185 LMASRKYPMLSELSTTREKTVAFRKPNYTLGFRNTDHLVNKSNWDIKLTKTGFTNEAGHC 244
           L AS+KYP+L +LS T +KTV F KP YTL FRNT+ LV+  NW I LTKTGFTN AGHC
Sbjct: 189 LKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRLVHNDNWKIDLTKTGFTNAAGHC 248

Query: 245 LVLLTRMDNRPVAMVILDAFGKYTHFADASRMRQWLETGSAKPAPAVAMQYKADRQNK 302
           LV+ T+M  R VA V+LD  GK +   DA+R+R W+ETG   P  + A QYK  R  +
Sbjct: 249 LVMRTQMGRRQVAFVVLDTKGKLSPVGDANRLRTWIETGKVTPLSSEAKQYKKQRSQE 306