Pairwise Alignments

Query, 268 a.a., diaminopimelate epimerase from Pseudomonas putida KT2440

Subject, 275 a.a., diaminopimelate epimerase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  118 bits (295), Expect = 2e-31
 Identities = 81/268 (30%), Positives = 132/268 (49%), Gaps = 15/268 (5%)

Query: 1   MQFYKYHAAGNDYLVYRDCVPFDCSKP-MISRICDRHRGLGSDGILV--PVIKEGERLSV 57
           +QF K H  GND++V           P  I R+ DR+ G+G D +L+  P          
Sbjct: 2   IQFTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHY 61

Query: 58  RIYNTDGSQAEKSGNGLRILCRYLWDQNIVAGSPFEISTKGGIVTCQVLDNGQRISIAMG 117
           RI+N DG + E  GNG R   R++ ++ +   +   +ST  G +T ++  +G  +++ MG
Sbjct: 62  RIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGT-VTVNMG 120

Query: 118 -------QAAFANTAAFTVDVDGTPLQLH---PVSMGNPHCVVFVDQPTETLARQLGPLI 167
                  Q  F    A    +  TP Q       SMGNPHCV+ V+        ++G L+
Sbjct: 121 VPVLEPSQIPFKAKKAEKTYLLQTPQQTFLCGAASMGNPHCVLDVEDVANANVAEIGALL 180

Query: 168 ERLSIFPDRTNVQFVRVIDRQTLEVQIWERGVGYTLSSGTSSCAAAAVSRRLGLVGPRVA 227
            +   FP   NV F++V++   ++++++ERG   TL+ GT +CAA  V +  G +  +V 
Sbjct: 181 TKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVQ 240

Query: 228 VNMAGGVIMIELDDDYHVL-MQGPVCRV 254
           V++ GG + I  + +   L M GP   V
Sbjct: 241 VDLPGGSLTINWEGEGKPLWMTGPAQHV 268