Pairwise Alignments

Query, 304 a.a., putative permease (RarD protein) from Pseudomonas putida KT2440

Subject, 302 a.a., protein RarD from Vibrio cholerae E7946 ATCC 55056

 Score =  134 bits (336), Expect = 3e-36
 Identities = 88/285 (30%), Positives = 153/285 (53%), Gaps = 3/285 (1%)

Query: 7   DAAAGLSAALASNCLLGLSSLYWKALAALPALALLGCRVLMSLLCVTLLLAARKELVPLL 66
           DA  G+  A+++  + G++ +Y+KAL A+ AL +L  RV+ S + + +L+   +    ++
Sbjct: 9   DAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVV 68

Query: 67  CVLKR-RDIALHGAAAVLVAGNWGTFIWASIHGHVLESGLGYLIAPVLGISLGLLLYQER 125
            V+   R   L    A+LV GNW  FIW+    H+L++ LGY I P+L + LG+L   ER
Sbjct: 69  GVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGER 128

Query: 126 LSVPRGLSLTMVIGSVVYLLFEKGGLDSRVFLVIGVTWGTYTWLKKLARLPPWSGLFLES 185
           L   +  ++ +    V   L   G +   V + +  ++G Y  L+K  ++   +GLFLE+
Sbjct: 129 LRKLQWFAVALAAIGVGIQLVVFGSVPI-VAIALATSFGFYGLLRKKIQVDAQTGLFLET 187

Query: 186 LVLGVLLMPLILWVSTPVAGIAALGSADTALLLLC-GAVSLLPLALFSFAARRLPLSVMG 244
           L +       ++W++       AL +    LLL+C G V+ LPL  F+ AA RL LS +G
Sbjct: 188 LFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAARLKLSTLG 247

Query: 245 LMQFVLPLTQFFVALMFYGQIPSHGAMLAFALIALAMLLVILEPL 289
             Q++ P   F +A++ YG+  +    + FA I  A+++  ++ L
Sbjct: 248 FFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGL 292