Pairwise Alignments

Query, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  199 bits (506), Expect = 9e-55
 Identities = 162/558 (29%), Positives = 264/558 (47%), Gaps = 66/558 (11%)

Query: 434 SQAHLETQQAELEQTNEQLSERTEALDRKNDELSQAQLELQARADDLQRSSKYKSEFLAN 493
           S+ H+E Q + ++Q    L E  E L+ +N EL  A+   Q  A       + KSEFLAN
Sbjct: 246 SEYHVEMQHS-IDQATSDLRETLEQLEIQNVELDIAKKRAQEAA-------RVKSEFLAN 297

Query: 494 MSHELRTPLNSSLILAKLLAENAEGNLSEEQVKFAESIYSAGNDLLNLINDILDIAKVEA 553
           MSHELRTPLN  +   + + +     L+  Q  + ++I  + N+LL +INDILD +K+EA
Sbjct: 298 MSHELRTPLNGVIGFTRQMLKT---QLTNSQADYLQTIEKSANNLLTIINDILDFSKLEA 354

Query: 554 GKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNL 613
           GKL +     + + ++E +  +    A  KGL   +K++P++P  +  D  R++Q+L NL
Sbjct: 355 GKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNL 414

Query: 614 LSNAIKFTERGQVSMNVSFQADSGIV----FAVRDTGIGIAADQQQAIFGAFHQVDGTSN 669
           + N+IKFTERG + ++V  +A    V    F VRDTGIGI+  QQ  +F AF Q D + +
Sbjct: 415 VGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASIS 474

Query: 670 RRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSLILPERYAAEAEDVEPQSLRPAV 729
           RRYGGTGLGL I++ L   +GG+I++ S   QGS F                  +LR   
Sbjct: 475 RRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWF----------------TLRLHT 518

Query: 730 DALPPAPQAPLAAAVTRPAPAFADDRERAPFDTRCILVIEDEPNFARILFDLAHELGYSC 789
             LP                   D       + R +L+IE     A I+     + G   
Sbjct: 519 TELP-----------------LNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV 561

Query: 790 LVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTVLQRLKEQ--ASTRHIPVHIISVE-D 846
                  E      Q++ D +LL++     +  T+++   ++  A T ++ V + S E  
Sbjct: 562 TYRSAIPE-----EQHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELA 616

Query: 847 RVEAAMHMGAVGYAVKPTSREELKEVFARLEAKL---------TQKLK-HILLVEDDDLQ 896
             +  M    V    KP SR++L +  A  + +L           KL   ++ V+D+   
Sbjct: 617 LADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLPLCVMAVDDNPAN 676

Query: 897 RESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGNELLKRMTAEDIR 956
            + I  L+ +    + +    Q+A+   +   +D +++D+++P M G    K +      
Sbjct: 677 LKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGY 736

Query: 957 AFPPVIVYTGRNLTREEE 974
              PVI  T   +  E +
Sbjct: 737 RDTPVIAVTAHAMAGERD 754



 Score = 89.0 bits (219), Expect = 2e-21
 Identities = 72/267 (26%), Positives = 131/267 (49%), Gaps = 19/267 (7%)

Query: 885  KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGN 944
            +H+LL+E +      + + +    +E+T  +   +      Q++YD ++++L  P    N
Sbjct: 535  RHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE-----EQHVYDYVLLNLA-PSKETN 588

Query: 945  ELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGARSPERLLDEVTLFLH 1004
              L  +  +   A    ++  G   T    AD L           R P + + +  L   
Sbjct: 589  PTLVELWVQRALAMTHNVI-VGVPSTELALADQLMQ---------RYPVKCISK-PLSRK 637

Query: 1005 KVESQLSNERQRMLKTARSRDKVFE-GRKVLLVDDDVRNIFALTSALEHKGAIVEIGRNG 1063
            K+   L+ ++ ++  T+  + +  +    V+ VDD+  N+  +T+ L+ +   V    +G
Sbjct: 638  KLLQTLAAQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSG 697

Query: 1064 REAIERLEQHDDIDLVLMDVMMPEMDGFEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRC 1123
            +EAIE+ +     D++LMD+ MP MDG  A + I+Q   +R  P+IAVTA AM  ++ R 
Sbjct: 698  QEAIEQAQSRQ-FDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRL 756

Query: 1124 LQAGANDYLAKPIDLDRLFSLIRVWLP 1150
            L+AG +DYL KPI+   L  ++  W P
Sbjct: 757  LKAGMDDYLTKPIEEHILQQVLVHWSP 783



 Score = 43.1 bits (100), Expect = 1e-07
 Identities = 106/553 (19%), Positives = 208/553 (37%), Gaps = 81/553 (14%)

Query: 385 MSIESARYRQRLQ----EVLAETQQLNEELQVQQEELKTANEELEEQSRVLKESQAH--- 437
           M++  + Y   +Q    +  ++ ++  E+L++Q  EL  A +  +E +RV  E  A+   
Sbjct: 241 MAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSH 300

Query: 438 ----------------LETQ----QAELEQT-----NEQLSERTEALDRKNDELSQAQLE 472
                           L+TQ    QA+  QT     N  L+   + LD    E  +  LE
Sbjct: 301 ELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALE 360

Query: 473 --------LQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQ 524
                   +     +LQ +S ++      +  + + P    ++   L  +    NL    
Sbjct: 361 NIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP--RGVVGDPLRIQQVLTNLVGNS 418

Query: 525 VKFAE-SIYSAGNDLLNLINDILDIAKV---------EAGKLEVRPETTQVERLVEGLRG 574
           +KF E        ++  L +D++D+  +         E  + ++    +Q +  +    G
Sbjct: 419 IKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYG 478

Query: 575 -------MFQPLAGHKGLAFEVKVEPQVPVTL-FTDRQRLEQILKNLLSNAIKFTERGQV 626
                  + Q L  H G    +        T  FT R    ++  N   NA     R  +
Sbjct: 479 GTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRHLL 538

Query: 627 SMNVSFQADSGIVFAVRDTGIGI----AADQQQAIFGAFHQVDGTSNRRYGGTGLGLSIS 682
            +  + QA + +   +  +G+ +    A  ++Q ++  +  ++   ++    T + L + 
Sbjct: 539 LIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEEQHVYD-YVLLNLAPSKETNPTLVELWVQ 597

Query: 683 RDLAHLLGGQINVDSSPGQGSVFSLILPERYAAEAEDVEPQSLRPAVDALPPAPQAPLAA 742
           R LA      + V   P      +  L +RY  +    +P S +  +  L  A Q P  A
Sbjct: 598 RALAMTHNVIVGV---PSTELALADQLMQRYPVKCIS-KPLSRKKLLQTL--AAQQPQLA 651

Query: 743 AVTRPAPAFADDRERAPFDTRCILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELA 802
             + P P      ++ P    C++ ++D P   +++  L  E     +      E  E A
Sbjct: 652 NTSLPKP----QADKLPL---CVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQA 704

Query: 803 AQYIPDAILLDMRLPDHSGLTVLQRLKEQASTRHIPVHIISVEDRV---EAAMHMGAVGY 859
                D IL+D+++P   G+T  + +K+    R  PV  ++        +  +  G   Y
Sbjct: 705 QSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDY 764

Query: 860 AVKPTSREELKEV 872
             KP     L++V
Sbjct: 765 LTKPIEEHILQQV 777