Pairwise Alignments

Query, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 754 a.a., GAF sensor hybrid histidine kinase from Synechococcus elongatus PCC 7942

 Score =  196 bits (499), Expect = 4e-54
 Identities = 139/416 (33%), Positives = 213/416 (51%), Gaps = 41/416 (9%)

Query: 451 QLSERTEALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAK 510
           QL ++T+ L+ +  E +Q  ++  A A   Q ++  K EFLA MSHELRTPL   + ++ 
Sbjct: 351 QLQDQTQTLENRVLERTQELIDALALA---QAANAAKGEFLATMSHELRTPLTCVIGMSS 407

Query: 511 LLAENAEGNLSEEQVKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVE 570
            L   A G L+E Q ++ ++I+ +G  LL LINDILD++++EAGK  ++     + RL  
Sbjct: 408 TLLRWAFGPLTERQREYIKAIHDSGEHLLELINDILDLSQIEAGKAALQVRPFSLSRLAT 467

Query: 571 GLRGMFQPLA--GHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTE-RGQVS 627
                 Q  A  G   L  ++++  +V V    D +RL QIL NLLSNA+KFTE +G V 
Sbjct: 468 QTLNTLQEKARLGEIQLMLDLQLNNRVDV-FRADPKRLRQILINLLSNAVKFTEPQGTVF 526

Query: 628 MNVSFQADSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAH 687
           + V  + D  I F V DTGIGI   +Q  +F  F Q+D +  R+YGGTGLGL++++ L  
Sbjct: 527 LRVWREGDRAI-FQVSDTGIGIPESEQAQLFQKFQQLDTSIRRQYGGTGLGLALTKQLVE 585

Query: 688 LLGGQINVDSSPGQGSVFSLILPERYAAEAEDVEPQSLRPAVDALPPAPQAPLAAAVTRP 747
           L GG I ++S+ GQGS F++ +PE+       +EP   RP++D LP              
Sbjct: 586 LHGGHIQIESTVGQGSTFTVWIPEQTL-----IEPVEPRPSIDNLPAGH----------- 629

Query: 748 APAFADDRERAPFDTRCILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIP 807
                            IL++E+E   A ++ ++    G+  +         +      P
Sbjct: 630 -----------------ILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQP 672

Query: 808 DAILLDMRLPDHSGLTVLQRLKEQASTRHIPVHIISVEDRVEAAMHMGAVGYAVKP 863
             IL+    PD S L +LQ L+E  +  H P+ +   E  V+  +   A     KP
Sbjct: 673 IVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKP 728



 Score = 28.9 bits (63), Expect = 0.002
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 35  VAVINYLLSAMQWVEHTDRVIGNANETVKLSIDM 68
           V+V   L  A+ W E  DR+I   +  ++LS+D+
Sbjct: 152 VSVCQPLEQALHWQEEQDRLISQVSAQIRLSLDL 185