Pairwise Alignments

Query, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  221 bits (562), Expect = 3e-61
 Identities = 195/619 (31%), Positives = 289/619 (46%), Gaps = 85/619 (13%)

Query: 328 EDFYRLSSGLGSGLPRSALLMPATEDGQINGVIELGFLRPLQERDEELLERVGGNL---- 383
           EDF   ++   S L  S       ED     V+    L  L E D +  E VG +     
Sbjct: 384 EDFLMATTSRLSALIESMQAGILVEDENRQIVLANQALGQLFELDVDPQELVGVDCRLVL 443

Query: 384 ----GMSIESARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRVLKESQAHLE 439
               G+  + AR+  R++ V+ + +       V  EE++ A+  + E+  +      +L 
Sbjct: 444 QHLQGLCADGARFVPRVEAVVEDRRA------VLGEEIRLADGRVLERDYI----PIYLF 493

Query: 440 TQQAELEQTNEQLSERTEALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELR 499
            Q A+ E     L    +  +RK+     A+LELQ   +  + +++ K EFLANMSHE+R
Sbjct: 494 PQVAQPEDYRGHLWLFRDITERKH-----AELELQQAKEAAESANRAKGEFLANMSHEIR 548

Query: 500 TPLNSSLILAKLLAENAEGNLSEEQVKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVR 559
           TP+N  L +  L  ++A   L+ EQ  + E + S+ + LL +INDILD +K+EAGKLE+ 
Sbjct: 549 TPMNGILGMTDLALDSA---LTPEQRDYLEMVKSSADALLVIINDILDFSKIEAGKLELE 605

Query: 560 PETTQVERLVEGLRGMFQPL---AGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSN 616
                + +L   LR   +PL   A  + L    +V  +V      D  RL Q+L NL+ N
Sbjct: 606 HIHFHLRQL---LRETLKPLELRARQRSLTLRCEVPEEVADGYLGDPGRLRQVLINLVGN 662

Query: 617 AIKFTERGQVSMNVSFQADSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTG 676
           AIKFTE GQV++ V  + D  + FAV DTGIGI AD+QQ IF AF Q D +  RR+GGTG
Sbjct: 663 AIKFTEEGQVAVRVEAR-DGLLHFAVSDTGIGIPADKQQLIFEAFSQADSSVTRRFGGTG 721

Query: 677 LGLSISRDLAHLLGGQINVDSSPGQGSVFSLILP-ERYAAEAEDVEPQSLRPAVDALPPA 735
           LGL+I   L  L+GG + V+S PGQGS F      E  A  AE  E  + R  V  LPP 
Sbjct: 722 LGLTICTRLVRLMGGHMWVESDPGQGSTFHFTARLEAVAGPAESGEADAGRGEV-VLPPL 780

Query: 736 PQAPLAAAVTRPAPAFADDRERAPFDTRCILVIEDEPNFARILFDLAHELGYSCLVAHGA 795
                                        +LV ED P   +++  L  + G+   +A   
Sbjct: 781 R----------------------------LLVAEDNPVNQKLVLTLLQKRGHRVTLADNG 812

Query: 796 DEGFELAAQYIPDAILLDMRLPDHSGLTVLQRLKEQASTR----HIPVHIISVE----DR 847
            +     A    D +L+DM++P   GL   +R++   + R    H+P+  ++      DR
Sbjct: 813 QQALAALATDHFDLVLMDMQMPVMGGLEATRRIRAAEAARGDGQHLPIVAMTANAMAGDR 872

Query: 848 VEAAMHMGAVGYAVKPTSREELKEVFARLEAKLTQKLKHILLVEDDDLQRESIARLIGDD 907
            E  +  G  GY  KP  R+E     A              ++  + L++   A  I  D
Sbjct: 873 -ELCLEAGMDGYVSKPLRRDEFFSAMAD-------------VLPPERLRQAGAAAAIPAD 918

Query: 908 DVEITAVAMAQDALALLRQ 926
                A A ++ A A LR+
Sbjct: 919 GQAAVAAAPSESAPAALRR 937



 Score = 82.8 bits (203), Expect = 1e-19
 Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 5/123 (4%)

Query: 1032 KVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGF 1091
            ++L+ +D+  N   + + L+ +G  V +  NG++A+  L   D  DLVLMD+ MP M G 
Sbjct: 781  RLLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALAT-DHFDLVLMDMQMPVMGGL 839

Query: 1092 EATRLIRQQPRWR----KLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRV 1147
            EATR IR     R     LPI+A+TA AM  D++ CL+AG + Y++KP+  D  FS +  
Sbjct: 840  EATRRIRAAEAARGDGQHLPIVAMTANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMAD 899

Query: 1148 WLP 1150
             LP
Sbjct: 900  VLP 902



 Score = 36.2 bits (82), Expect = 1e-05
 Identities = 18/68 (26%), Positives = 38/68 (55%)

Query: 887 ILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGNEL 946
           +L+ ED+ + ++ +  L+      +T     Q ALA L  + +D +++D+++P M G E 
Sbjct: 782 LLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALATDHFDLVLMDMQMPVMGGLEA 841

Query: 947 LKRMTAED 954
            +R+ A +
Sbjct: 842 TRRIRAAE 849