Pairwise Alignments

Query, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  207 bits (527), Expect = 3e-57
 Identities = 159/517 (30%), Positives = 249/517 (48%), Gaps = 51/517 (9%)

Query: 465 ELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQ 524
           E   A+ EL+   +  + +++ KSEFLANMSHE+RTP    L +  LL       L+E+Q
Sbjct: 332 ERKAAESELRHAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLDLLLHTP---LNEKQ 388

Query: 525 VKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKG 584
            ++    Y +   LL ++NDILDI+K+EAGKL + PE   +  L+  L  +    A  KG
Sbjct: 389 ERYIRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELTEVQAAAAAQKG 448

Query: 585 LAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERGQVSMNVS----FQADSGIVF 640
           L F   ++  +P  +  D  RL QI+ NLL+NAIKFT  G V +++           +  
Sbjct: 449 LEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAPGRQHLRV 508

Query: 641 AVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPG 700
            VRD+GIG+  + Q+ IF  F Q D ++ R +GGTGLGL+I + L  L+ G I V S+ G
Sbjct: 509 EVRDSGIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELMHGSIGVSSNSG 568

Query: 701 QGSVFSLILPERYAAEAEDVEPQSLRPAVDALPPAPQAPLAAAVTRPAPAFADDRERAPF 760
           +GS F             D+E     P V    P P  P  + +T             P 
Sbjct: 569 EGSCFWF-----------DIELPESDPTVS---PVPVLPAGSPIT-----------ALPR 603

Query: 761 DTRCILVIEDEPNFARILFDLAHELGYSCLVAHGAD--EGFELAAQYIPDAILLDMRLPD 818
           DTR +LV + E N   +   LA      C V   A+  E   LA  + PDAIL+D ++  
Sbjct: 604 DTRILLVDDTEANREVLAEYLAQA---HCQVRQAANGLEAVTLAESWQPDAILMDCQMAG 660

Query: 819 HSGLTVLQRLK-EQASTRHIPVHIISV----EDRVEAAMHMGAVGYAVKPTSREELKEVF 873
             G    ++++ ++   R  P+  ++      DR E  +  G   Y  KP   + L    
Sbjct: 661 MDGYEATRQIRIQEGQRRRTPIIALTAFVMRGDR-EKCLAAGMDDYLPKPVDAQTLIATI 719

Query: 874 AR-LEAKLTQKLK------HILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQ 926
            + LE + T   +       ILLV+D+   RE+   L+     ++ + +  ++AL L  +
Sbjct: 720 GKWLEGRETNPARTPRFSGRILLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPE 779

Query: 927 NIYDCMIIDLKLPDMLGNELLKRMTAEDIRAFPPVIV 963
             +D +++D ++P + G    +   A + R  P  I+
Sbjct: 780 ADFDLVLMDCRMPGLDGCATTRAWRARE-RGTPTAII 815



 Score = 98.2 bits (243), Expect = 2e-24
 Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 16/264 (6%)

Query: 887  ILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGNEL 946
            ILLV+D +  RE +A  +     ++   A   +A+ L      D +++D ++  M G E 
Sbjct: 607  ILLVDDTEANREVLAEYLAQAHCQVRQAANGLEAVTLAESWQPDAILMDCQMAGMDGYEA 666

Query: 947  LKRMTAED-IRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGARSPERLLDEVTLFLHK 1005
             +++  ++  R   P+I  T   +  + E  L       + K        +D  TL +  
Sbjct: 667  TRQIRIQEGQRRRTPIIALTAFVMRGDREKCLAAGMDDYLPKP-------VDAQTL-IAT 718

Query: 1006 VESQLSNERQRMLKTARSRDKVFEGRKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGRE 1065
            +   L        +T R     F GR +LLVDD+     A T  LE  G  V+   +G E
Sbjct: 719  IGKWLEGRETNPARTPR-----FSGR-ILLVDDNPEIREASTCLLEALGCQVQSASSGEE 772

Query: 1066 AIERLEQHDDIDLVLMDVMMPEMDGFEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQ 1125
            A++ L    D DLVLMD  MP +DG   TR  R + R     IIA+TA    + + +C +
Sbjct: 773  ALQ-LGPEADFDLVLMDCRMPGLDGCATTRAWRARERGTPTAIIALTAGDPDESRAQCRE 831

Query: 1126 AGANDYLAKPIDLDRLFSLIRVWL 1149
            AG ND+LAKP     L +L+R WL
Sbjct: 832  AGMNDFLAKPFSEQELVTLLRRWL 855



 Score = 88.6 bits (218), Expect = 2e-21
 Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 1032 KVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGF 1091
            ++LLVDD   N   L   L      V    NG EA+   E     D +LMD  M  MDG+
Sbjct: 606  RILLVDDTEANREVLAEYLAQAHCQVRQAANGLEAVTLAESWQP-DAILMDCQMAGMDGY 664

Query: 1092 EATRLIR-QQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1149
            EATR IR Q+ + R+ PIIA+TA  M+ D+++CL AG +DYL KP+D   L + I  WL
Sbjct: 665  EATRQIRIQEGQRRRTPIIALTAFVMRGDREKCLAAGMDDYLPKPVDAQTLIATIGKWL 723